myRT

myRT report for GCA_001054465.1_ASM105446v1

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Seq: JVSE01000101.1 Enterococcus faecium strain 152_EFCM 1059_12855_391097_411+,207+, whole genome shotgun sequence (12855 bp)
Overview 1 RT 1: 6098-10402 bp Neighborhood of RT #1 [6098, 10402] PRK09290 AlbA_2 RVT-AbiP2 DUF3841 Feature: gene Location: 6098-7372 bp Feature: domain Description: PRK09290 Location: 6116-7364 bp Feature: domain Description: PRK09290 Location: 61 1 6-7364 bp Feature: gene Location: 7473-7787 bp Feature: domain Description: AlbA_2 Location: 7512-7683 bp Feature: domain Description: AlbA_2 Location: 751 2-7683 bp Feature: gene Location: 7933-9429 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 8341-8797 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 8341 -8797 bp Feature: gene Location: 9607-10086 bp Feature: domain Description: DUF3841 Location: 9616-9991 bp Feature: domain Description: DUF3841 Location: 961 6-9991 bp Feature: gene Location: 10253-10402 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09290 (allantoate amidohydrolase; Reviewed), AlbA_2 (pfam04326), RVT-AbiP2, DUF3841 (pfam12952)

Seq: JVSE01000137.1 Enterococcus faecium strain 152_EFCM 1095_44467_1441724_582_,...,764_, whole genome shotgun sequence (44467 bp)
Overview 1 RT 1: 123-3843 bp Neighborhood of RT #1 [123, 3863] RVT-GII HNHc FtsK Feature: gene Location: 123-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 432-1173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 432 -1173 bp Feature: domain Description: HNHc Note: nucleases Location: 1728-1866 bp Feature: domain Description: HNHc Note: nucleases Location: 172 8-1866 bp Feature: gene Location: 2101-2331 bp Feature: gene Location: 2697-3863 bp Feature: domain Description: FtsK Location: 3378-3843 bp Feature: domain Description: FtsK Location: 3378-3843 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), FtsK (COG1674)

Seq: JVSE01000149.1 Enterococcus faecium strain 152_EFCM 1107_13517_420978_662+,627_, whole genome shotgun sequence (13517 bp)
Overview 1 RT 1: 7765-11946 bp Neighborhood of RT #1 [7765, 12773] AAA_10 RVT-GII Feature: gene Location: 7765-9888 bp Feature: gene Location: 9893-10813 bp Feature: domain Description: AAA_10 Location: 9899-10778 bp Feature: domain Description: AAA_10 Location: 9899-10778 bp Feature: gene Location: 10947-12773 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11247-11946 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11247-11946 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_10 (pfam12846), RVT-GII

Seq: JVSE01000165.1 Enterococcus faecium strain 152_EFCM 1123_31829_828662_756+,582+, whole genome shotgun sequence (31829 bp)
Overview 1 RT 1: 27988-31591 bp Neighborhood of RT #1 [27988, 31707] FtsK RVT-GII HNHc Feature: gene Location: 27988-29133 bp Feature: domain Description: FtsK Location: 28597-29113 bp Feature: domain Description: FtsK Location: 28597-29113 bp Feature: gene Location: 29499-29729 bp Feature: gene Location: 29848-31707 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30157-30898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30157-30898 bp Feature: domain Description: HNHc Note: nucleases Location: 31453-31591 bp Feature: domain Description: HNHc Note: nucleases Location: 314 53-31591 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FtsK (COG1674), RVT-GII, HNHc (smart00507)

Seq: JVSE01000196.1 Enterococcus faecium strain 152_EFCM 1155_9695_406110_927+,210+,582_, whole genome shotgun sequence (9695 bp)
Overview 1 RT 1: 131-9312 bp Neighborhood of RT #1 [131, 9312] RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans Zeta_toxin RVT-GII HNHc Feature: gene Location: 131-2041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1202 bp Feature: domain Description: HNHc Note: nucleases Location: 1757-1922 bp Feature: domain Description: HNHc Note: nucleases Location: 175 7-1922 bp Feature: gene Location: 2921-4105 bp Feature: domain Description: HTH_XRE Location: 2951-3095 bp Feature: domain Description: HTH_XRE Location: 295 1-3095 bp Feature: domain Description: Rol_Rep_N Location: 3128-3392 bp Feature: domain Description: Rol_Rep_N Location: 3128-3392 bp Feature: domain Description: Rep_trans Location: 3416-4028 bp Feature: domain Description: Rep_trans Location: 3416-4028 bp Feature: gene Location: 4198-4341 bp Feature: gene Location: 6019-6693 bp Feature: domain Description: Zeta_toxin Location: 6118-6601 bp Feature: domain Description: Zeta_toxin Location: 6118-6601 bp Feature: gene Location: 6771-7010 bp Feature: gene Location: 7104-8963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7413-8154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7413-815 4 bp Feature: domain Description: HNHc Note: nucleases Location: 8709-8847 bp Feature: domain Description: HNHc Note: nucleases Location: 8709-8847 bp Feature: gene Location: 9082-9312 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), Zeta_toxin (pfam06414)

Seq: JVSE01000197.1 Enterococcus faecium strain 152_EFCM 1156_7178_351842_927+,211+,582_, whole genome shotgun sequence (7178 bp)
Overview 1 RT 1: 131-6795 bp Neighborhood of RT #1 [131, 6795] RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc Feature: gene Location: 131-2041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46 4-1202 bp Feature: domain Description: HNHc Note: nucleases Location: 1757-1922 bp Feature: domain Description: HNHc Note: nucleases Location: 1757-1922 bp Feature: gene Location: 2825-4030 bp Feature: domain Description: HTH_XRE Location: 2870-3014 bp Feature: domain Description: HTH_XRE Location: 2870-3014 bp Feature: domain Description: Rol_Rep_N Location: 3041-3308 bp Feature: domain Description: Rol_Rep_N Location: 3041-3308 bp Feature: domain Description: Rep_trans Location: 3332-3941 bp Feature: domain Description: Rep_trans Location: 3332-3941 bp Feature: gene Location: 4209-4493 bp Feature: gene Location: 4587-6446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4896-5637 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4896 -56 37 bp Feature: domain Description: HNHc Note: nucleases Location: 6192-6330 bp Feature: domain Description: HNHc Note: nucleases Location: 6 192-6 330 bp Feature: gene Location: 6565-6795 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486)

Seq: JVSE01000198.1 Enterococcus faecium strain 152_EFCM 1157_8098_376127_927_,413+,627+, whole genome shotgun sequence (8098 bp)
Overview 1 RT 1: 721-7157 bp Neighborhood of RT #1 [721, 7984] RVT-GII HNHc ArdA TcpE AAA_10 RVT-GII Feature: gene Location: 721-2631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1054-1792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1054-17 92 bp Feature: domain Description: HNHc Note: nucleases Location: 2347-2512 bp Feature: domain Description: HNHc Note: nucleases Location: 2347 -2512 bp Feature: gene Location: 2819-2959 bp Feature: gene Location: 2972-3475 bp Feature: domain Description: ArdA Location: 2990-3461 bp Feature: domain Description: ArdA Location: 2990-3461 bp Feature: gene Location: 3535-3924 bp Feature: domain Description: TcpE Location: 3553-3853 bp Feature: domain Description: TcpE Location: 3553-3853 bp Feature: gene Location: 3911-5461 bp Feature: domain Description: AAA_10 Location: 5240-5423 bp Feature: domain Description: AAA_10 Location: 5240-5423 bp Feature: gene Location: 6158-7984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6458-7157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6458-7 157 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), ArdA (pfam07275), TcpE (pfam12648), AAA_10 (pfam12846)

Seq: JVSE01000199.1 Enterococcus faecium strain 152_EFCM 1158_8226_379703_927_,843+,627+, whole genome shotgun sequence (8226 bp)
Overview 1 RT 1: 721-7285 bp Neighborhood of RT #1 [721, 8112] RVT-GII HNHc ArdA AAA_10 RVT-GII Feature: gene Location: 721-2631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1054-1792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1054-1792 bp Feature: domain Description: HNHc Note: nucleases Location: 2347-2512 bp Feature: domain Description: HNHc Note: nucleases Location: 2347-2512 bp Feature: gene Location: 2792-2959 bp Feature: gene Location: 3076-3573 bp Feature: domain Description: ArdA Location: 3094-3559 bp Feature: domain Description: ArdA Location: 3094-3559 bp Feature: gene Location: 3985-5589 bp Feature: domain Description: AAA_10 Location: 5368-5554 bp Feature: domain Description: AAA_10 Location: 5368 -5554 bp Feature: gene Location: 6286-8112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6586-7285 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 658 6-728 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), ArdA (pfam07275), AAA_10 (pfam12846)

Seq: JVSE01000208.1 Enterococcus faecium strain 152_EFCM 1167_14549_853504_930+,835+,627_, whole genome shotgun sequence (14549 bp)
Overview 1 RT 1: 8742-12978 bp Neighborhood of RT #1 [8742, 13805] AAA_10 RVT-GII Feature: gene Location: 8742-10925 bp Feature: gene Location: 10928-11845 bp Feature: domain Description: AAA_10 Location: 10934-11813 bp Feature: domain Description: AAA_10 Location: 109 34-11813 bp Feature: gene Location: 11979-13805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12279-12978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12279 -129 78 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_10 (pfam12846), RVT-GII

Seq: JVSE01000027.1 Enterococcus faecium strain 152_EFCM 984_27753_920665_85_,...,261_, whole genome shotgun sequence (27753 bp)
Overview 1 RT 1: 15467-22299 bp Neighborhood of RT #1 [15467, 22307] CcmA AcrR RVT-GII GIIM CE4_DAC_u3_5s PRK13354 Feature: gene Location: 15467-16348 bp Feature: domain Description: CcmA Location: 15470-16340 bp Feature: domain Description: CcmA Location: 15470-16340 bp Feature: gene Location: 16602-17201 bp Feature: domain Description: AcrR Location: 16620-17106 bp Feature: domain Description: AcrR Location: 16620-1710 6 bp Feature: gene Location: 17688-19076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18009-18624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18009-18624 bp Feature: domain Description: GIIM Note: maturase Location: 18681-18897 bp Feature: domain Description: GIIM Note: maturase Location: 18681-18897 bp Feature: gene Location: 19169-20605 bp Feature: domain Description: CE4_DAC_u3_5s Location: 19973-20366 bp Feature: domain Description: CE4_DAC_u3_5s Location: 19973-20366 bp Feature: gene Location: 21051-22307 bp Feature: domain Description: PRK13354 Location: 21054-22299 bp Feature: domain Description: PRK13354 Location: 210 54-22299 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CcmA (COG4133), AcrR (COG1309), RVT-GII, GIIM (pfam08388), CE4_DAC_u3_5s (cd10972), PRK13354 (tyrosyl-tRNA synthetase; Provisional)