myRT

myRT report for GCA_001054895.1_ASM105489v1

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Seq: JVLP01000047.1 Bacteroides fragilis strain 322_BFRA 269_58847_866980, whole genome shotgun sequence (58847 bp)
Overview 1 RT 1: 2434-7161 bp Neighborhood of RT #1 [2434, 7161] YurZ QdoI PRK07116 RVT-CRISPR-like Feature: gene Location: 2434-3252 bp Feature: domain Description: YurZ Location: 2509-2821 bp Feature: domain Description: YurZ Location: 2509-2821 bp Feature: domain Description: QdoI Location: 2899-3220 bp Feature: domain Description: QdoI Location: 2899-3220 bp Feature: gene Location: 3266-3835 bp Feature: domain Description: PRK07116 Location: 3362-3830 bp Feature: domain Description: PRK071 1 6 Location: 3362-3830 bp Feature: gene Location: 4245-5450 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 4431-5094 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 4431 -5094 bp Feature: gene Location: 5574-6869 bp Feature: gene Location: 6859-7161 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YurZ (COG0599), QdoI (COG1917), PRK07116 (flavodoxin; Provisional), RVT-CRISPR

Seq: JVLP01000118.1 Bacteroides fragilis strain 322_BFRA 739_16545_301739_113+,721_, whole genome shotgun sequence (16545 bp)
Overview 1 RT 1: 13789-16349 bp Neighborhood of RT #1 [13789, 16420] DUF4134 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 13789-14067 bp Feature: domain Description: DUF4134 Location: 13849-14050 bp Feature: domain Description: DUF4134 Location: 13849-14050 bp Feature: gene Location: 14079-14429 bp Feature: gene Location: 14609-16420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14873-15695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14873-15695 bp Feature: domain Description: Intron_maturas2 Location: 15884-16094 bp Feature: domain Description: Intron_maturas2 Location: 15884-16094 bp Feature: domain Description: HNHc Note: nucleases Location: 16244-16349 bp Feature: domain Description: HNHc Note: nucleases Location: 162 44-16349 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JVLP01000127.1 Bacteroides fragilis strain 322_BFRA 748_39414_1046979_191+,300+,369+, whole genome shotgun sequence (39414 bp)
Overview 1 RT 1: 34795-38916 bp Neighborhood of RT #1 [34795, 39293] Relaxase YWFCY RVT_N RVT-GII GIIM Feature: gene Location: 34795-36045 bp Feature: domain Description: Relaxase Location: 34897-35347 bp Feature: domain Description: Relaxase Location: 3 4897-3 53 47 bp Feature: gene Location: 36078-37004 bp Feature: domain Description: YWFCY Location: 36087-36264 bp Feature: domain Description: YWFCY Location: 3 6087-3 6264 bp Feature: gene Location: 37641-39293 bp Feature: domain Description: RVT_N Location: 37695-37938 bp Feature: domain Description: RVT_N Location: 3 7695-3 793 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37983-38631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 7983 -3 863 1 bp Feature: domain Description: GIIM Note: maturase Location: 38685-38916 bp Feature: domain Description: GIIM Note: maturase Location: 3 8685-3 8916 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JVLP01000136.1 Bacteroides fragilis strain 322_BFRA 757_33857_571254_228+,721_, whole genome shotgun sequence (33857 bp)
Overview 1 RT 1: 30704-33661 bp Neighborhood of RT #1 [30704, 33732] DUF4134 DUF4134 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 30704-31027 bp Feature: domain Description: DUF4134 Location: 30728-31013 bp Feature: domain Description: DUF4 134 Location: 30728-31013 bp Feature: gene Location: 31089-31379 bp Feature: domain Description: DUF4134 Location: 31164-31362 bp Feature: domain Description: DUF4 134 Location: 31164 -31362 bp Feature: gene Location: 31921-33732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32185-33007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32185-33007 bp Feature: domain Description: Intron_maturas2 Location: 33196-33406 bp Feature: domain Description: Intron_maturas2 Location: 33196-334 06 bp Feature: domain Description: HNHc Note: nucleases Location: 33556-33661 bp Feature: domain Description: HNHc Note: nucleases Location: 33556-33661 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JVLP01000157.1 Bacteroides fragilis strain 322_BFRA 778_31610_628976_369+,...,626+, whole genome shotgun sequence (31610 bp)
Overview 1 RT 1: 645-4015 bp 2 RT 2: 19828-28988 bp Neighborhood of RT #1 [645, 4015] RVT_N RVT-GII GIIM TraG-D_C Neighborhood of RT #2 [19828, 29371] HTH_ARAC RVT_N RVT-GII GIIM N6_Mtase COG4646 Feature: gene Location: 645-2297 bp Feature: domain Description: RVT_N Location: 699-942 bp Feature: domain Description: RVT_N Location: 699-942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 987-1635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 987-1635 bp Feature: domain Description: GIIM Note: maturase Location: 1689-1920 bp Feature: domain Description: GIIM Note: maturase Location: 1689-1920 bp Feature: gene Location: 2302-3507 bp Feature: domain Description: TraG-D_C Location: 2884-3214 bp Feature: domain Description: TraG-D_C Location: 2884-3214 bp Feature: gene Location: 3602-4015 bp Feature: gene Location: 19828-20985 bp Feature: domain Description: HTH_ARAC Location: 20719-20965 bp Feature: domain Description: HTH_ARAC Location: 20719-20965 bp Feature: gene Location: 21128-22378 bp Feature: gene Location: 22332-23999 bp Feature: domain Description: RVT_N Location: 22386-22629 bp Feature: domain Description: RVT_N Location: 22386-22629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22674-23322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22674-23322 bp Feature: domain Description: GIIM Note: maturase Location: 23376-23607 bp Feature: domain Description: GIIM Note: maturase Location: 23376-23607 bp Feature: gene Location: 23981-24295 bp Feature: gene Location: 24656-29371 bp Feature: domain Description: N6_Mtase Location: 24968-25568 bp Feature: domain Description: N6_Mtase Location: 24968-25 5 68 bp Feature: domain Description: COG4646 Location: 26978-28988 bp Feature: domain Description: COG4646 Location: 26978-28988 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696), HTH_ARAC (smart00342), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )

Seq: JVLP01000158.1 Bacteroides fragilis strain 322_BFRA 779_78900_1275772_369_,709+, whole genome shotgun sequence (78900 bp)
Overview 1 RT 1: 122-2240 bp Neighborhood of RT #1 [122, 2240] RVT_N RVT-GII GIIM Feature: gene Location: 122-1774 bp Feature: domain Description: RVT_N Location: 176-419 bp Feature: domain Description: RVT_N Location: 176 -419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46 4-1112 bp Feature: domain Description: GIIM Note: maturase Location: 1166-1397 bp Feature: domain Description: GIIM Note: maturase Location: 116 6 -1397 bp Feature: gene Location: 1856-2029 bp Feature: gene Location: 2091-2240 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JVLP01000170.1 Bacteroides fragilis strain 322_BFRA 791_103704_1516828_609+,349+, whole genome shotgun sequence (103704 bp)
Overview 1 RT 1: 75610-84574 bp Neighborhood of RT #1 [75610, 84576] RNase_Z rpsA RVT-Retrons GlnA3 Feature: gene Location: 75610-76524 bp Feature: domain Description: RNase_Z Location: 75625-76516 bp Feature: domain Description: RNase_Z Location: 7 5625-7 6516 bp Feature: gene Location: 76674-78467 bp Feature: domain Description: rpsA Location: 76752-78360 bp Feature: domain Description: rpsA Location: 7 67 52-7 8360 bp Feature: gene Location: 78609-79721 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 78924-79473 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7 8924-7 947 3 bp Feature: gene Location: 79928-82147 bp Feature: gene Location: 82387-84576 bp Feature: domain Description: GlnA3 Location: 82462-84574 bp Feature: domain Description: GlnA3 Location: 82462-8457 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RNase_Z (TIGR02651), rpsA (TIGR00717), RVT-Retrons, GlnA3 (COG3968)

Seq: JVLP01000171.1 Bacteroides fragilis strain 322_BFRA 792_29222_529934_612+,...,369_, whole genome shotgun sequence (29222 bp)
Overview 1 RT 1: 25247-29044 bp Neighborhood of RT #1 [25247, 29044] TraG-D_C RVT_N RVT-GII GIIM Feature: gene Location: 25247-25480 bp Feature: gene Location: 25716-26921 bp Feature: domain Description: TraG-D_C Location: 26298-26631 bp Feature: domain Description: TraG-D_C Location: 26298 -26631 bp Feature: gene Location: 26926-28578 bp Feature: domain Description: RVT_N Location: 26980-27223 bp Feature: domain Description: RVT_N Location: 2698 0-27223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27268-27916 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27268 -27916 bp Feature: domain Description: GIIM Note: maturase Location: 27970-28201 bp Feature: domain Description: GIIM Note: maturase Location: 27970-28 201 bp Feature: gene Location: 28685-28849 bp Feature: gene Location: 28895-29044 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JVLP01000174.1 Bacteroides fragilis strain 322_BFRA 795_35639_575932_636+,369_, whole genome shotgun sequence (35639 bp)
Overview 1 RT 1: 30137-35461 bp Neighborhood of RT #1 [30137, 35461] RVT_N RVT-GII GIIM Feature: gene Location: 30137-32239 bp Feature: gene Location: 32250-33338 bp Feature: gene Location: 33343-34995 bp Feature: domain Description: RVT_N Location: 33397-33640 bp Feature: domain Description: RVT_N Location: 3339 7-33640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33685-34333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33685-34333 bp Feature: domain Description: GIIM Note: maturase Location: 34387-34618 bp Feature: domain Description: GIIM Note: maturase Location: 34387-34618 bp Feature: gene Location: 35080-35250 bp Feature: gene Location: 35312-35461 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JVLP01000182.1 Bacteroides fragilis strain 322_BFRA 803_112686_2036254_711+,30+,721+, whole genome shotgun sequence (112686 bp)
Overview 1 RT 1: 8377-9799 bp 2 RT 2: 109849-112685 bp Neighborhood of RT #1 [8377, 9799] RVT-GII HTH_28 Neighborhood of RT #2 [109849, 112685] DUF4133 DUF4134 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 8377-8739 bp Feature: gene Location: 8743-8952 bp Feature: gene Location: 8982-9179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8985-9177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8985-9177 bp Feature: gene Location: 9300-9590 bp Feature: domain Description: HTH_28 Location: 9324-9471 bp Feature: domain Description: HTH_28 Location: 9324-9471 bp Feature: gene Location: 9665-9799 bp Feature: gene Location: 109849-110145 bp Feature: domain Description: DUF4133 Location: 109891-110068 bp Feature: domain Description: DUF4133 Location: 10 9891-110 068 bp Feature: gene Location: 110158-110352 bp Feature: domain Description: DUF4134 Location: 110248-110338 bp Feature: domain Description: DUF4134 Location: 110 248-110 338 bp Feature: gene Location: 110377-112188 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110641-111463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110 641-111463 bp Feature: domain Description: Intron_maturas2 Location: 111652-111862 bp Feature: domain Description: Intron_maturas2 Location: 111652-111862 bp Feature: domain Description: HNHc Note: nucleases Location: 112012-112117 bp Feature: domain Description: HNHc Note: nucleases Location: 112012-112117 bp Feature: gene Location: 112368-112685 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_28 (pfam13518), DUF4133 (pfam13571), DUF4134 (pfam13572), Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JVLP01000190.1 Bacteroides fragilis strain 322_BFRA 811_55717_1015275_725+,327+,721+, whole genome shotgun sequence (55717 bp)
Overview 1 RT 1: 52882-55716 bp Neighborhood of RT #1 [52882, 55716] DUF4133 DUF4134 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 52882-53175 bp Feature: domain Description: DUF4133 Location: 52921-53101 bp Feature: domain Description: DUF4133 Location: 52921-53101 bp Feature: gene Location: 53189-53383 bp Feature: domain Description: DUF4134 Location: 53279-53369 bp Feature: domain Description: DUF4134 Location: 53279-53369 bp Feature: gene Location: 53408-55219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53672-54494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53672-54494 bp Feature: domain Description: Intron_maturas2 Location: 54683-54893 bp Feature: domain Description: Intron_maturas2 Location: 54683-54893 bp Feature: domain Description: HNHc Note: nucleases Location: 55043-55148 bp Feature: domain Description: HNHc Note: nucleases Location: 55043-55148 bp Feature: gene Location: 55399-55716 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)