myRT

myRT report for GCA_001055105.1_ASM105510v1

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Seq: JVHV01000212.1 Escherichia coli strain 42_ECOL 1472_47366_517309, whole genome shotgun sequence (47366 bp)
Overview 1 RT 1: 34755-38696 bp Neighborhood of RT #1 [34755, 38696] RVT-Retrons Feature: gene Location: 34755-35894 bp Feature: gene Location: 35940-36107 bp Feature: gene Location: 36129-37901 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36288-36906 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36288-36906 bp Feature: gene Location: 38122-38265 bp Feature: gene Location: 38457-38696 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: JVHV01000218.1 Escherichia coli strain 42_ECOL 1491_18860_321477, whole genome shotgun sequence (18860 bp)
Overview 1 RT 1: 8217-15048 bp Neighborhood of RT #1 [8217, 15056] CcmA AcrR RVT-GII GIIM CE4_DAC_u3_5s PRK13354 Feature: gene Location: 8217-9098 bp Feature: domain Description: CcmA Location: 8220-9090 bp Feature: domain Description: CcmA Location: 82 2 0-9090 bp Feature: gene Location: 9352-9951 bp Feature: domain Description: AcrR Location: 9370-9856 bp Feature: domain Description: AcrR Location: 9370-9856 bp Feature: gene Location: 10438-11826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10759-11374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10759-11374 bp Feature: domain Description: GIIM Note: maturase Location: 11431-11647 bp Feature: domain Description: GIIM Note: maturase Location: 11431-11647 bp Feature: gene Location: 11919-13355 bp Feature: domain Description: CE4_DAC_u3_5s Location: 12723-13116 bp Feature: domain Description: CE4_DAC_u3_5s Location: 12 72 3-13116 bp Feature: gene Location: 13800-15056 bp Feature: domain Description: PRK13354 Location: 13803-15048 bp Feature: domain Description: PRK13354 Location: 13803-15048 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CcmA (COG4133), AcrR (COG1309), RVT-GII, GIIM (pfam08388), CE4_DAC_u3_5s (cd10972), PRK13354 (tyrosyl-tRNA synthetase; Provisional)

Seq: JVHV01000428.1 Escherichia coli strain 42_ECOL 2771_3755_190267_307+,96+, whole genome shotgun sequence (3755 bp)
Overview 1 RT 1: 10-3729 bp Neighborhood of RT #1 [10, 3752] HsdM RVT-AbiP2 Tra8 Feature: gene Location: 10-1488 bp Feature: domain Description: HsdM Location: 31-1456 bp Feature: domain Description: HsdM Location: 3 1-1456 bp Feature: gene Location: 1826-3301 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2174-2639 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2174-263 9 bp Feature: gene Location: 3279-3752 bp Feature: domain Description: Tra8 Location: 3282-3729 bp Feature: domain Description: Tra8 Location: 3 282-3 729 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), RVT-AbiP2, Tra8 (COG2826)

Seq: JVHV01000458.1 Escherichia coli strain 42_ECOL 2802_21611_443419_605_,...,1424+, whole genome shotgun sequence (21611 bp)
Overview 1 RT 1: 2434-6730 bp Neighborhood of RT #1 [2434, 6738] DUF3841 RVT-AbiP2 AlbA_2 PRK09290 Feature: gene Location: 2434-2583 bp Feature: gene Location: 2750-3229 bp Feature: domain Description: DUF3841 Location: 2759-3134 bp Feature: domain Description: DUF384 1 Location: 2759-3134 bp Feature: gene Location: 3407-4903 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 3815-4271 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 3815-4 271 bp Feature: gene Location: 5049-5363 bp Feature: domain Description: AlbA_2 Location: 5088-5259 bp Feature: domain Description: AlbA_2 Location: 5088-5259 bp Feature: gene Location: 5464-6738 bp Feature: domain Description: PRK09290 Location: 5482-6730 bp Feature: domain Description: PRK09290 Location: 54 82-6730 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3841 (pfam12952), RVT-AbiP2, AlbA_2 (pfam04326), PRK09290 (allantoate amidohydrolase; Reviewed)

Seq: JVHV01000478.1 Escherichia coli strain 42_ECOL 2822_4508_148508_869+,2230+, whole genome shotgun sequence (4508 bp)
Overview 1 RT 1: 131-4505 bp Neighborhood of RT #1 [131, 4505] RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans Feature: gene Location: 131-2041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1202 bp Feature: domain Description: HNHc Note: nucleases Location: 1757-1922 bp Feature: domain Description: HNHc Note: nucleases Location: 175 7-1922 bp Feature: gene Location: 2825-4030 bp Feature: domain Description: HTH_XRE Location: 2870-3014 bp Feature: domain Description: HTH_XRE Location: 2870-3014 bp Feature: domain Description: Rol_Rep_N Location: 3041-3308 bp Feature: domain Description: Rol_Rep_N Location: 3041-3308 bp Feature: domain Description: Rep_trans Location: 3332-3941 bp Feature: domain Description: Rep_trans Location: 3332-3941 bp Feature: gene Location: 4209-4505 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486)

Seq: JVHV01000479.1 Escherichia coli strain 42_ECOL 2823_25825_600784_869+,...,1641+, whole genome shotgun sequence (25825 bp)
Overview 1 RT 1: 131-10803 bp Neighborhood of RT #1 [131, 10823] RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans Zeta_toxin RVT-GII HNHc FtsK Feature: gene Location: 131-2041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46 4-1202 bp Feature: domain Description: HNHc Note: nucleases Location: 1757-1922 bp Feature: domain Description: HNHc Note: nucleases Location: 1757-1922 bp Feature: gene Location: 2921-4105 bp Feature: domain Description: HTH_XRE Location: 2951-3095 bp Feature: domain Description: HTH_XRE Location: 2951-3095 bp Feature: domain Description: Rol_Rep_N Location: 3128-3392 bp Feature: domain Description: Rol_Rep_N Location: 3128-3392 bp Feature: domain Description: Rep_trans Location: 3416-4028 bp Feature: domain Description: Rep_trans Location: 3416 -4028 bp Feature: gene Location: 4198-4341 bp Feature: gene Location: 6019-6693 bp Feature: domain Description: Zeta_toxin Location: 6118-6601 bp Feature: domain Description: Zeta_toxin Location: 6 118-6 6 01 bp Feature: gene Location: 6771-7010 bp Feature: gene Location: 7104-8963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7413-8154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7413-8154 bp Feature: domain Description: HNHc Note: nucleases Location: 8709-8847 bp Feature: domain Description: HNHc Note: nucleases Location: 8709-8847 bp Feature: gene Location: 9082-9312 bp Feature: gene Location: 9678-10823 bp Feature: domain Description: FtsK Location: 10287-10803 bp Feature: domain Description: FtsK Location: 10287-10803 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), Zeta_toxin (pfam06414), FtsK (COG1674)

Seq: JVHV01000508.1 Escherichia coli strain 42_ECOL 2853_5381_171964_1213+,1042+, whole genome shotgun sequence (5381 bp)
Overview 1 RT 1: 115-4493 bp Neighborhood of RT #1 [115, 4564] RVT-GII AAA_10 TcpE Feature: gene Location: 115-1899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 373-1072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37 3-107 2 bp Feature: gene Location: 2638-4188 bp Feature: domain Description: AAA_10 Location: 3967-4150 bp Feature: domain Description: AAA_10 Location: 3967 -4150 bp Feature: gene Location: 4175-4564 bp Feature: domain Description: TcpE Location: 4193-4493 bp Feature: domain Description: TcpE Location: 4193-4493 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, AAA_10 (pfam12846), TcpE (pfam12648)

Seq: JVHV01000509.1 Escherichia coli strain 42_ECOL 2854_13498_310134_1213_,501+, whole genome shotgun sequence (13498 bp)
Overview 1 RT 1: 745-5753 bp Neighborhood of RT #1 [745, 5753] RVT-GII AAA_10 Feature: gene Location: 745-2571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1045-1744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1045-1744 bp Feature: gene Location: 2705-3625 bp Feature: domain Description: AAA_10 Location: 2711-3590 bp Feature: domain Description: AAA_10 Location: 2711-3590 bp Feature: gene Location: 3630-5753 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, AAA_10 (pfam12846)

Seq: JVHV01000542.1 Escherichia coli strain 42_ECOL 2887_9389_235643_1779_,1057+, whole genome shotgun sequence (9389 bp)
Overview 1 RT 1: 3-3956 bp Neighborhood of RT #1 [3, 3961] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 3-320 bp Feature: gene Location: 773-982 bp Feature: gene Location: 1117-3018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1384-2215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1384-2215 bp Feature: domain Description: Intron_maturas2 Location: 2329-2587 bp Feature: domain Description: Intron_maturas2 Location: 2329 -2587 bp Feature: domain Description: HNHc Note: nucleases Location: 2761-2923 bp Feature: domain Description: HNHc Note: nucleases Location: 2761-29 23 bp Feature: gene Location: 3213-3665 bp Feature: domain Description: PRK13732 Location: 3219-3663 bp Feature: domain Description: PRK13732 Location: 3219 -3663 bp Feature: gene Location: 3728-3961 bp Feature: domain Description: DUF905 Location: 3758-3956 bp Feature: domain Description: DUF9 05 Location: 3758-39 56 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: JVHV01000568.1 Escherichia coli strain 42_ECOL 2913_14071_314410_2080+,1213+, whole genome shotgun sequence (14071 bp)
Overview 1 RT 1: 8264-12458 bp Neighborhood of RT #1 [8264, 13285] AAA_10 RVT-GII Feature: gene Location: 8264-10447 bp Feature: gene Location: 10450-11367 bp Feature: domain Description: AAA_10 Location: 10456-11335 bp Feature: domain Description: AAA_10 Location: 10 456-11335 bp Feature: gene Location: 11501-13285 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11759-12458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11759-12458 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_10 (pfam12846), RVT-GII