myRT

myRT report for GCA_001055235.1_ASM105523v1

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Seq: JVEC01000050.1 Enterococcus faecium strain 514_EFCM 1312_13552_351889_265_,...,360_, whole genome shotgun sequence (13552 bp)
Overview 1 RT 1: 7800-11981 bp Neighborhood of RT #1 [7800, 12808] AAA_10 RVT-GII Feature: gene Location: 7800-9923 bp Feature: gene Location: 9928-10848 bp Feature: domain Description: AAA_10 Location: 9934-10813 bp Feature: domain Description: AAA_1 0 Location: 9934-1 081 3 bp Feature: gene Location: 10982-12808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11282-11981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 282-1 1 981 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, AAA_10 (pfam12846)

Seq: JVEC01000057.1 Enterococcus faecium strain 514_EFCM 1323_8226_323804_360_,668+,259+, whole genome shotgun sequence (8226 bp)
Overview 1 RT 1: 115-8164 bp Neighborhood of RT #1 [115, 8164] RVT-GII AAA_10 ArdA RVT-GII HNHc Feature: gene Location: 115-1941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 415-1114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 415-1114 bp Feature: gene Location: 2638-4242 bp Feature: domain Description: AAA_10 Location: 4021-4207 bp Feature: domain Description: AAA_10 Location: 402 1-42 07 bp Feature: gene Location: 4654-5151 bp Feature: domain Description: ArdA Location: 4672-5137 bp Feature: domain Description: ArdA Location: 4672 -5137 bp Feature: gene Location: 5268-5435 bp Feature: gene Location: 5596-7506 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5929-6667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 592 9-6667 bp Feature: domain Description: HNHc Note: nucleases Location: 7222-7387 bp Feature: domain Description: HNHc Note: nucleases Location: 72 2 2 -7387 bp Feature: gene Location: 8015-8164 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, AAA_10 (pfam12846), ArdA (pfam07275), HNHc (smart00507)

Seq: JVEC01000058.1 Enterococcus faecium strain 514_EFCM 1324_8098_325560_360_,669+,259+, whole genome shotgun sequence (8098 bp)
Overview 1 RT 1: 115-8036 bp Neighborhood of RT #1 [115, 8036] RVT-GII AAA_10 TcpE ArdA RVT-GII HNHc Feature: gene Location: 115-1941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 415-1114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 415-1114 bp Feature: gene Location: 2638-4188 bp Feature: domain Description: AAA_10 Location: 3967-4150 bp Feature: domain Description: AAA_10 Location: 3 967-4150 bp Feature: gene Location: 4175-4564 bp Feature: domain Description: TcpE Location: 4193-4493 bp Feature: domain Description: TcpE Location: 4193 -4493 bp Feature: gene Location: 4624-5127 bp Feature: domain Description: ArdA Location: 4642-5113 bp Feature: domain Description: ArdA Location: 4642-5113 bp Feature: gene Location: 5129-5338 bp Feature: gene Location: 5468-7378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5801-6539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5801-653 9 bp Feature: domain Description: HNHc Note: nucleases Location: 7094-7259 bp Feature: domain Description: HNHc Note: nucleases Location: 7094-7259 bp Feature: gene Location: 7887-8036 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, AAA_10 (pfam12846), TcpE (pfam12648), ArdA (pfam07275), HNHc (smart00507)

Seq: JVEC01000157.1 Enterococcus faecium strain 514_EFCM 1428_14077_342758_1007+,360_, whole genome shotgun sequence (14077 bp)
Overview 1 RT 1: 8270-12464 bp Neighborhood of RT #1 [8270, 13291] AAA_10 RVT-GII Feature: gene Location: 8270-10453 bp Feature: gene Location: 10456-11373 bp Feature: domain Description: AAA_10 Location: 10462-11341 bp Feature: domain Description: AAA_10 Location: 104 62-1134 1 bp Feature: gene Location: 11507-13291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11765-12464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11765-124 64 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_10 (pfam12846), RVT-GII

Seq: JVEC01000170.1 Enterococcus faecium strain 514_EFCM 1444_7178_307442_1183+,907+,259_, whole genome shotgun sequence (7178 bp)
Overview 1 RT 1: 384-6929 bp Neighborhood of RT #1 [384, 7048] RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc Feature: gene Location: 384-614 bp Feature: gene Location: 733-2592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1042-1783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1042-1783 bp Feature: domain Description: HNHc Note: nucleases Location: 2338-2476 bp Feature: domain Description: HNHc Note: nucleases Location: 2338-2476 bp Feature: gene Location: 2686-2970 bp Feature: gene Location: 3149-4354 bp Feature: domain Description: HTH_XRE Location: 3194-3338 bp Feature: domain Description: HTH_XRE Location: 3194-3338 bp Feature: domain Description: Rol_Rep_N Location: 3365-3632 bp Feature: domain Description: Rol_Rep_N Location: 3365 -3632 bp Feature: domain Description: Rep_trans Location: 3656-4265 bp Feature: domain Description: Rep_trans Location: 365 6-4265 bp Feature: gene Location: 5138-7048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5471-6209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 471-6209 bp Feature: domain Description: HNHc Note: nucleases Location: 6764-6929 bp Feature: domain Description: HNHc Note: nucleases Location: 6764-6929 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), RVT-GII, HNHc (smart00507)

Seq: JVEC01000171.1 Enterococcus faecium strain 514_EFCM 1445_9695_346438_1183+,908+,259_, whole genome shotgun sequence (9695 bp)
Overview 1 RT 1: 384-9446 bp Neighborhood of RT #1 [384, 9565] RVT-GII HNHc Zeta_toxin HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc Feature: gene Location: 384-614 bp Feature: gene Location: 733-2592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1042-1783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1042-1783 bp Feature: domain Description: HNHc Note: nucleases Location: 2338-2476 bp Feature: domain Description: HNHc Note: nucleases Location: 2338-2476 bp Feature: gene Location: 2686-2925 bp Feature: gene Location: 3003-3677 bp Feature: domain Description: Zeta_toxin Location: 3102-3585 bp Feature: domain Description: Zeta_toxin Location: 3102-3585 bp Feature: gene Location: 5355-5498 bp Feature: gene Location: 5591-6775 bp Feature: domain Description: HTH_XRE Location: 5621-5765 bp Feature: domain Description: HTH_XRE Location: 56 21-576 5 bp Feature: domain Description: Rol_Rep_N Location: 5798-6062 bp Feature: domain Description: Rol_Rep_N Location: 5798-6 06 2 bp Feature: domain Description: Rep_trans Location: 6086-6698 bp Feature: domain Description: Rep_trans Location: 6 086 -6 6 98 bp Feature: gene Location: 7655-9565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7988-8726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7988-8726 bp Feature: domain Description: HNHc Note: nucleases Location: 9281-9446 bp Feature: domain Description: HNHc Note: nucleases Location: 9281-9446 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Zeta_toxin (pfam06414), RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486)

Seq: JVEC01000224.1 Enterococcus faecium strain 514_EFCM 1499_44467_1211161_194+,...,1183+, whole genome shotgun sequence (44467 bp)
Overview 1 RT 1: 40605-44229 bp Neighborhood of RT #1 [40605, 44345] FtsK RVT-GII HNHc Feature: gene Location: 40605-41771 bp Feature: domain Description: FtsK Location: 41286-41751 bp Feature: domain Description: FtsK Location: 41286-417 51 bp Feature: gene Location: 42137-42367 bp Feature: gene Location: 42486-44345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42795-43536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 427 95-43536 bp Feature: domain Description: HNHc Note: nucleases Location: 44091-44229 bp Feature: domain Description: HNHc Note: nucleases Location: 44091-44229 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FtsK (COG1674), RVT-GII, HNHc (smart00507)

Seq: JVEC01000228.1 Enterococcus faecium strain 514_EFCM 1503_34265_839499_806+,...,1183+, whole genome shotgun sequence (34265 bp)
Overview 1 RT 1: 30424-34027 bp Neighborhood of RT #1 [30424, 34143] FtsK RVT-GII HNHc Feature: gene Location: 30424-31569 bp Feature: domain Description: FtsK Location: 31033-31549 bp Feature: domain Description: FtsK Location: 31033-31549 bp Feature: gene Location: 31935-32165 bp Feature: gene Location: 32284-34143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32593-33334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32593-33334 bp Feature: domain Description: HNHc Note: nucleases Location: 33889-34027 bp Feature: domain Description: HNHc Note: nucleases Location: 338 8 9-34027 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FtsK (COG1674), RVT-GII, HNHc (smart00507)

Seq: JVEC01000230.1 Enterococcus faecium strain 514_EFCM 1505_26760_505456_1094_,...,1134+, whole genome shotgun sequence (26760 bp)
Overview 1 RT 1: 5434-12265 bp Neighborhood of RT #1 [5434, 12273] PRK13354 CE4_DAC_u3_5s RVT-GII GIIM AcrR CcmA Feature: gene Location: 5434-6690 bp Feature: domain Description: PRK13354 Location: 5437-6682 bp Feature: domain Description: PRK13354 Location: 5437-6682 bp Feature: gene Location: 7246-8571 bp Feature: domain Description: CE4_DAC_u3_5s Location: 7939-8332 bp Feature: domain Description: CE4_DAC_u3_5s Location: 79 39 -8332 bp Feature: gene Location: 8664-10052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8985-9600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89 85-9 600 bp Feature: domain Description: GIIM Note: maturase Location: 9657-9873 bp Feature: domain Description: GIIM Note: maturase Location: 9 657-9 873 bp Feature: gene Location: 10539-11138 bp Feature: domain Description: AcrR Location: 10557-11043 bp Feature: domain Description: AcrR Location: 10557-11043 bp Feature: gene Location: 11392-12273 bp Feature: domain Description: CcmA Location: 11395-12265 bp Feature: domain Description: CcmA Location: 1139 5-12265 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AcrR (COG1309), CcmA (COG4133), PRK13354 (tyrosyl-tRNA synthetase; Provisional), CE4_DAC_u3_5s (cd10972), RVT-GII, GIIM (pfam08388)