myRT

myRT report for GCA_001055325.1_ASM105532v1

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Seq: JVCR01000031.1 Burkholderia cenocepacia strain 547_BMUL 1506_18045_216487_290+,...,963+, whole genome shotgun sequence (18045 bp)
Overview 1 RT 1: 206-2707 bp Neighborhood of RT #1 [206, 2707] RVT-GII GIIM DHFR_1 Feature: gene Location: 206-1531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 467-1085 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 467-1 085 bp Feature: domain Description: GIIM Note: maturase Location: 1136-1346 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 36-1 346 bp Feature: gene Location: 1617-2117 bp Feature: domain Description: DHFR_1 Location: 1629-2106 bp Feature: domain Description: DHFR_1 Location: 1 629-21 06 bp Feature: gene Location: 2408-2707 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DHFR_1 (pfam00186), RVT-GII, GIIM (pfam08388)

Seq: JVCR01000093.1 Burkholderia cenocepacia strain 547_BMUL 1578_2958_92120_923+,290+, whole genome shotgun sequence (2958 bp)
Overview 1 RT 1: 300-2711 bp Neighborhood of RT #1 [300, 2896] COG3547 RVT-GII GIIM Feature: gene Location: 300-1334 bp Feature: domain Description: COG3547 Location: 315-1278 bp Feature: domain Description: COG3547 Location: 315-12 78 bp Feature: gene Location: 1499-2896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1832-2450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1832 -2 450 bp Feature: domain Description: GIIM Note: maturase Location: 2501-2711 bp Feature: domain Description: GIIM Note: maturase Location: 2 501-2 711 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: JVCR01000094.1 Burkholderia cenocepacia strain 547_BMUL 1579_75197_991638_923+,690+,1184_, whole genome shotgun sequence (75197 bp)
Overview 1 RT 1: 300-4976 bp Neighborhood of RT #1 [300, 4990] COG3547 RVT-GII GIIM GDP_MD_SDR_e Gmd Feature: gene Location: 300-1334 bp Feature: domain Description: COG3547 Location: 315-1278 bp Feature: domain Description: COG3 547 Location: 3 15-1278 bp Feature: gene Location: 1583-2872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1838-2453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 183 8-2453 bp Feature: domain Description: GIIM Note: maturase Location: 2513-2714 bp Feature: domain Description: GIIM Note: maturase Location: 2513 -2714 bp Feature: gene Location: 2992-3882 bp Feature: domain Description: GDP_MD_SDR_e Location: 2995-3850 bp Feature: domain Description: GDP_MD_SDR_e Location: 2995-3 850 bp Feature: gene Location: 3944-4990 bp Feature: domain Description: Gmd Location: 3959-4976 bp Feature: domain Description: Gmd Location: 3 959-4976 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), GDP_MD_SDR_e (cd05260), COG3547 (Transposase )

Seq: JVCR01000122.1 Burkholderia cenocepacia strain 547_BMUL 1609_6868_179177_1098+,273+,290_, whole genome shotgun sequence (6868 bp)
Overview 1 RT 1: 3323-6550 bp Neighborhood of RT #1 [3323, 6735] PRK09121 RutF RVT-GII GIIM Feature: gene Location: 3323-4351 bp Feature: domain Description: PRK09121 Location: 3335-4346 bp Feature: domain Description: PRK09121 Location: 3335-4 34 6 bp Feature: gene Location: 4453-5001 bp Feature: domain Description: RutF Location: 4519-4981 bp Feature: domain Description: RutF Location: 4 519-4 981 bp Feature: gene Location: 5338-6735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5671-6289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5671-6289 bp Feature: domain Description: GIIM Note: maturase Location: 6340-6550 bp Feature: domain Description: GIIM Note: maturase Location: 634 0-6550 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09121 (methionine synthase), RutF (TIGR03615), RVT-GII, GIIM (pfam08388)

Seq: JVCR01000124.1 Burkholderia cenocepacia strain 547_BMUL 1611_248389_3381760_1098+,...,624+, whole genome shotgun sequence (248502 bp)
Overview 1 RT 1: 118571-124076 bp Neighborhood of RT #1 [118571, 124099] his_ut_repres FIN RVT-Retrons Histone_HNS MFS_MucK Feature: gene Location: 118571-119488 bp Feature: domain Description: his_ut_repres Location: 118811-119483 bp Feature: domain Description: his_ut_repres Location: 118811-119483 bp Feature: gene Location: 119807-120295 bp Feature: domain Description: FIN Location: 119903-120260 bp Feature: domain Description: FIN Location: 119903-120260 bp Feature: gene Location: 120549-121898 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 121014-121650 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 121014-12165 0 bp Feature: gene Location: 122203-122553 bp Feature: domain Description: Histone_HNS Location: 122245-122482 bp Feature: domain Description: Histone_HNS Location: 122245 -122482 bp Feature: gene Location: 122864-124099 bp Feature: domain Description: MFS_MucK Location: 122942-124076 bp Feature: domain Description: MFS_MucK Location: 122942-124076 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816), MFS_MucK (cd17371)