myRT

myRT report for GCA_001055715.1_ASM105571v1

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Seq: JVQW01000090.1 Enterococcus faecium strain 185_EFCM 1183_39479_1686342_239_,...,359_, whole genome shotgun sequence (39479 bp)
Overview 1 RT 1: 8621-13018 bp Neighborhood of RT #1 [8621, 13710] MazE RVT-GII HNHc VirB4 Feature: gene Location: 8621-8884 bp Feature: domain Description: MazE Location: 8642-8879 bp Feature: domain Description: MazE Location: 8642-8879 bp Feature: gene Location: 8943-9263 bp Feature: gene Location: 9451-11328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9766-10504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9766-1 0504 bp Feature: domain Description: HNHc Note: nucleases Location: 11062-11215 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 062-1 1 21 5 bp Feature: gene Location: 11515-11748 bp Feature: gene Location: 12016-13710 bp Feature: domain Description: VirB4 Location: 12334-13018 bp Feature: domain Description: VirB4 Location: 1 2334-1 301 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), MazE (COG2336), RVT-GII, HNHc (smart00507)

Seq: JVQW01000095.1 Enterococcus faecium strain 185_EFCM 1188_4829_365131_262+,...,550_, whole genome shotgun sequence (4829 bp)
Overview 1 RT 1: 881-3304 bp Neighborhood of RT #1 [881, 4119] PRK03103 PolY_Pol_V_umuC RVT-GII Feature: gene Location: 881-1030 bp Feature: domain Description: PRK03103 Location: 887-998 bp Feature: domain Description: PRK03103 Location: 887-998 bp Feature: gene Location: 1210-2136 bp Feature: domain Description: PolY_Pol_V_umuC Location: 1216-2113 bp Feature: domain Description: PolY_Pol_V_umuC Location: 12 16-2 113 bp Feature: gene Location: 2257-4119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2566-3304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 566-3304 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PolY_Pol_V_umuC (cd01700), RVT-GII, PRK03103 (DNA polymerase IV; Reviewed)

Seq: JVQW01000105.1 Enterococcus faecium strain 185_EFCM 1198_10746_451740_332_,...,1119+, whole genome shotgun sequence (10746 bp)
Overview 1 RT 1: 7065-9697 bp Neighborhood of RT #1 [7065, 9816] ArdA RVT-GII HNHc Feature: gene Location: 7065-7565 bp Feature: domain Description: ArdA Location: 7083-7554 bp Feature: domain Description: ArdA Location: 7083 -7554 bp Feature: gene Location: 7578-7730 bp Feature: gene Location: 7906-9816 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8239-8977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 823 9-8977 bp Feature: domain Description: HNHc Note: nucleases Location: 9532-9697 bp Feature: domain Description: HNHc Note: nucleases Location: 953 2-9697 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdA (pfam07275), RVT-GII, HNHc (smart00507)

Seq: JVQW01000141.1 Enterococcus faecium strain 185_EFCM 1234_16460_459464_500_,...,1119+, whole genome shotgun sequence (16460 bp)
Overview 1 RT 1: 12776-15411 bp Neighborhood of RT #1 [12776, 15530] ArdA RVT-GII HNHc Feature: gene Location: 12776-13279 bp Feature: domain Description: ArdA Location: 12794-13265 bp Feature: domain Description: ArdA Location: 12794 -13265 bp Feature: gene Location: 13281-13490 bp Feature: gene Location: 13620-15530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13953-14691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13953-14 691 bp Feature: domain Description: HNHc Note: nucleases Location: 15246-15411 bp Feature: domain Description: HNHc Note: nucleases Location: 1524 6-154 11 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdA (pfam07275), RVT-GII, HNHc (smart00507)

Seq: JVQW01000150.1 Enterococcus faecium strain 185_EFCM 1243_4768_433718_550+,...,962_, whole genome shotgun sequence (4768 bp)
Overview 1 RT 1: 711-3729 bp Neighborhood of RT #1 [711, 3950] RVT-GII PolY_Pol_V_umuC Feature: gene Location: 711-2573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1020-1758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1020-175 8 bp Feature: gene Location: 2585-2734 bp Feature: gene Location: 2745-3950 bp Feature: domain Description: PolY_Pol_V_umuC Location: 2751-3729 bp Feature: domain Description: PolY_Pol_V_umuC Location: 275 1-3729 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PolY_Pol_V_umuC (cd01700), RVT-GII

Seq: JVQW01000151.1 Enterococcus faecium strain 185_EFCM 1244_4768_444943_550+,...,962_, whole genome shotgun sequence (4768 bp)
Overview 1 RT 1: 711-4293 bp Neighborhood of RT #1 [711, 4293] RVT-GII PolY_Pol_V_umuC Feature: gene Location: 711-2573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1020-1758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1020-1758 bp Feature: gene Location: 2745-3950 bp Feature: domain Description: PolY_Pol_V_umuC Location: 2751-3729 bp Feature: domain Description: PolY_Pol_V_umuC Location: 2751-3729 bp Feature: gene Location: 3943-4293 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PolY_Pol_V_umuC (cd01700), RVT-GII

Seq: JVQW01000152.1 Enterococcus faecium strain 185_EFCM 1245_47787_2403833_550_,733+,359_, whole genome shotgun sequence (47787 bp)
Overview 1 RT 1: 117-3773 bp 2 RT 2: 32735-37240 bp Neighborhood of RT #1 [117, 3773] RVT-GII DUF2325 Neighborhood of RT #2 [32735, 37240] Phage_lysozyme2 PHA01817 RVT-GII GIIM Feature: gene Location: 117-1979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 426-1164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 426-1164 bp Feature: gene Location: 2904-3209 bp Feature: domain Description: DUF2325 Location: 2997-3147 bp Feature: domain Description: DUF2325 Location: 2997 -3147 bp Feature: gene Location: 3486-3773 bp Feature: gene Location: 32735-34108 bp Feature: domain Description: Phage_lysozyme2 Location: 32957-33422 bp Feature: domain Description: Phage_lysozyme2 Location: 32957 -33422 bp Feature: domain Description: PHA01817 Location: 33548-34079 bp Feature: domain Description: PHA01817 Location: 33548-3407 9 bp Feature: gene Location: 34192-34671 bp Feature: gene Location: 35131-36519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35452-36067 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35452-36067 bp Feature: domain Description: GIIM Note: maturase Location: 36124-36340 bp Feature: domain Description: GIIM Note: maturase Location: 36124-36340 bp Feature: gene Location: 36672-36920 bp Feature: gene Location: 36923-37240 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DUF2325 (pfam10087), Phage_lysozyme2 (pfam18013), PHA01817 (hypothetical protein), GIIM (pfam08388)

Seq: JVQW01000190.1 Enterococcus faecium strain 185_EFCM 1283_5523_405607_897+,...,550+, whole genome shotgun sequence (5523 bp)
Overview 1 RT 1: 1725-4592 bp Neighborhood of RT #1 [1725, 5407] SR_ResInv HTH_49 RVT-GII Feature: gene Location: 1725-2300 bp Feature: domain Description: SR_ResInv Location: 1734-2112 bp Feature: domain Description: SR_ResInv Location: 1734-2112 bp Feature: domain Description: HTH_49 Location: 2190-2277 bp Feature: domain Description: HTH_49 Location: 2190-2277 bp Feature: gene Location: 2460-2663 bp Feature: gene Location: 3545-5407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3854-4592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38 54-4592 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SR_ResInv (cd03768), HTH_49 (pfam18010), RVT-GII

Seq: JVQW01000198.1 Enterococcus faecium strain 185_EFCM 1291_6593_456063_955_,...,550+, whole genome shotgun sequence (6593 bp)
Overview 1 RT 1: 1786-5662 bp Neighborhood of RT #1 [1786, 6477] HEPN_Apea PinE RVT-GII Feature: gene Location: 1786-2610 bp Feature: domain Description: HEPN_Apea Location: 2005-2308 bp Feature: domain Description: HEPN_Apea Location: 2005-2308 bp Feature: gene Location: 2775-3389 bp Feature: domain Description: PinE Location: 2781-3375 bp Feature: domain Description: PinE Location: 2781-3375 bp Feature: gene Location: 4615-6477 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4924-5662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49 24-5662 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HEPN_Apea (pfam18739), PinE (COG1961), RVT-GII

Seq: JVQW01000244.1 Enterococcus faecium strain 185_EFCM 1337_17419_458843_1119+,...,502+, whole genome shotgun sequence (17419 bp)
Overview 1 RT 1: 151-4361 bp Neighborhood of RT #1 [151, 4361] RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans Feature: gene Location: 151-2061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 484-1222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 484-1222 bp Feature: domain Description: HNHc Note: nucleases Location: 1777-1942 bp Feature: domain Description: HNHc Note: nucleases Location: 1777-1942 bp Feature: gene Location: 2941-4125 bp Feature: domain Description: HTH_XRE Location: 2971-3115 bp Feature: domain Description: HTH_XRE Location: 2971-3115 bp Feature: domain Description: Rol_Rep_N Location: 3148-3412 bp Feature: domain Description: Rol_Rep_N Location: 3148-3412 bp Feature: domain Description: Rep_trans Location: 3436-4048 bp Feature: domain Description: Rep_trans Location: 3436-4048 bp Feature: gene Location: 4218-4361 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486)