myRT

myRT report for GCA_001055845.1_ASM105584v1

Download annotations/find similar RTs

Seq: JVQH01000204.1 Enterococcus faecium strain 199_EFCM 1896_3724_153022_336+,816+,917_, whole genome shotgun sequence (3724 bp)
Overview 1 RT 1: 92-3703 bp Neighborhood of RT #1 [92, 3723] HsdM RVT-AbiP2 Tra8 Feature: gene Location: 92-1570 bp Feature: domain Description: HsdM Location: 113-1538 bp Feature: domain Description: HsdM Location: 1 1 3-1 538 bp Feature: gene Location: 1908-3383 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2256-2721 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2256-2721 bp Feature: gene Location: 3361-3723 bp Feature: domain Description: Tra8 Location: 3370-3703 bp Feature: domain Description: Tra8 Location: 3370-3703 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), RVT-AbiP2, Tra8 (COG2826)

Seq: JVQH01000294.1 Enterococcus faecium strain 199_EFCM 1986_33175_483470_1374+,1873_, whole genome shotgun sequence (33175 bp)
Overview 1 RT 1: 12753-17807 bp Neighborhood of RT #1 [12753, 17807] ArdA RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans Feature: gene Location: 12753-13256 bp Feature: domain Description: ArdA Location: 12771-13242 bp Feature: domain Description: ArdA Location: 12 771-132 42 bp Feature: gene Location: 13258-13467 bp Feature: gene Location: 13597-15507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13930-14668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13930-14668 bp Feature: domain Description: HNHc Note: nucleases Location: 15223-15388 bp Feature: domain Description: HNHc Note: nucleases Location: 152 2 3-15388 bp Feature: gene Location: 16387-17571 bp Feature: domain Description: HTH_XRE Location: 16417-16561 bp Feature: domain Description: HTH_XRE Location: 16417-16561 bp Feature: domain Description: Rol_Rep_N Location: 16594-16858 bp Feature: domain Description: Rol_Rep_N Location: 16594-16858 bp Feature: domain Description: Rep_trans Location: 16882-17494 bp Feature: domain Description: Rep_trans Location: 16882 -17494 bp Feature: gene Location: 17664-17807 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdA (pfam07275), RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486)

Seq: JVQH01000295.1 Enterococcus faecium strain 199_EFCM 1987_10795_402090_1391_,209+, whole genome shotgun sequence (10795 bp)
Overview 1 RT 1: 5222-10306 bp Neighborhood of RT #1 [5222, 10311] VirB4 RVT-GII HNHc MazE Feature: gene Location: 5222-6916 bp Feature: domain Description: VirB4 Location: 5540-6224 bp Feature: domain Description: VirB4 Location: 5540-6224 bp Feature: gene Location: 7184-7417 bp Feature: gene Location: 7604-9481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7919-8657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7919-8657 bp Feature: domain Description: HNHc Note: nucleases Location: 9215-9368 bp Feature: domain Description: HNHc Note: nucleases Location: 9215-93 68 bp Feature: gene Location: 9669-9989 bp Feature: gene Location: 10048-10311 bp Feature: domain Description: MazE Location: 10069-10306 bp Feature: domain Description: MazE Location: 10069-103 06 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, HNHc (smart00507), MazE (COG2336)