myRT

myRT report for GCA_001056215.1_ASM105621v1

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Seq: JVMY01000124.1 Escherichia coli strain 284_ECOL 1921_2028_40791_113+,1887_, whole genome shotgun sequence (2028 bp)
Overview 1 RT 1: 2-2024 bp Neighborhood of RT #1 [2, 2026] RT_G2_intron RVT-UG1 YeeP Feature: gene Location: 2-709 bp Feature: domain Description: RT_G2_intron Location: 287-407 bp Feature: domain Description: RT_G2_intron Location: 287-407 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 614-707 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 61 4-707 bp Feature: gene Location: 1313-2026 bp Feature: domain Description: YeeP Location: 1316-2024 bp Feature: domain Description: YeeP Location: 1 31 6-2024 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RT_G2_intron (cd01651), RVT-UG1, YeeP (COG3596)

Seq: JVMY01000138.1 Escherichia coli strain 284_ECOL 1935_12104_164702_335_,...,261_, whole genome shotgun sequence (12104 bp)
Overview 1 RT 1: 7253-9534 bp Neighborhood of RT #1 [7253, 12101] HEPN_Apea GerD RVT-UG1 Feature: gene Location: 7253-8353 bp Feature: domain Description: HEPN_Apea Location: 7322-7637 bp Feature: domain Description: HEPN_Apea Location: 732 2 -7637 bp Feature: gene Location: 8650-9084 bp Feature: domain Description: GerD Location: 8728-8842 bp Feature: domain Description: GerD Location: 872 8-8842 bp Feature: gene Location: 9093-12101 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 9096-9534 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 9096-9534 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HEPN_Apea (pfam18739), GerD (pfam17898), RVT-UG1

Seq: JVMY01000154.1 Escherichia coli strain 284_ECOL 1952_2097_31406_509_,1257+, whole genome shotgun sequence (2097 bp)
Overview 1 RT 1: 1-1840 bp Neighborhood of RT #1 [1, 1926] YhhI RVT-GII GIIM Feature: gene Location: 1-144 bp Feature: domain Description: YhhI Location: 22-118 bp Feature: domain Description: YhhI Location: 22-118 bp Feature: gene Location: 172-312 bp Feature: gene Location: 676-1926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 880-1537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 880-153 7 bp Feature: domain Description: GIIM Note: maturase Location: 1618-1840 bp Feature: domain Description: GIIM Note: maturase Location: 1618-1840 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), RVT-GII, GIIM (pfam08388)

Seq: JVMY01000157.1 Escherichia coli strain 284_ECOL 1955_12480_250390_523_,1642+,1056+, whole genome shotgun sequence (12480 bp)
Overview 1 RT 1: 10393-12412 bp Neighborhood of RT #1 [10393, 12477] PRK10173 PRK10173 RVT-GII PHA02517 Feature: gene Location: 10393-10842 bp Feature: domain Description: PRK10173 Location: 10396-10834 bp Feature: domain Description: PRK10173 Location: 10396-10834 bp Feature: gene Location: 10826-11137 bp Feature: domain Description: PRK10173 Location: 10829-11048 bp Feature: domain Description: PRK10173 Location: 10829-1104 8 bp Feature: gene Location: 11176-11679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11449-11518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114 4 9-11518 bp Feature: gene Location: 12271-12477 bp Feature: domain Description: PHA02517 Location: 12274-12412 bp Feature: domain Description: PHA02517 Location: 12274 -124 12 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed)

Seq: JVMY01000210.1 Escherichia coli strain 284_ECOL 2009_3748_99404_1056_,...,71_, whole genome shotgun sequence (3748 bp)
Overview 1 RT 1: 1-3193 bp Neighborhood of RT #1 [1, 3231] PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 1-210 bp Feature: domain Description: PHA02517 Location: 7-145 bp Feature: domain Description: PHA025 17 Location: 7-145 bp Feature: gene Location: 802-2325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1075-1807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1075 -1807 bp Feature: domain Description: GIIM Note: maturase Location: 1882-2080 bp Feature: domain Description: GIIM Note: maturase Location: 1882-2080 bp Feature: gene Location: 2502-2798 bp Feature: domain Description: PHA02517 Location: 2505-2754 bp Feature: domain Description: PHA025 17 Location: 25 05 -275 4 bp Feature: gene Location: 2827-3231 bp Feature: domain Description: InsE Location: 2857-3193 bp Feature: domain Description: InsE Location: 285 7-3193 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963)