myRT

myRT report for GCA_001056335.1_ASM105633v1

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Seq: JVLQ01000078.1 Bacteroides fragilis strain 321_BFRA 710_53506_944185_261+,373+, whole genome shotgun sequence (53506 bp)
Overview 1 RT 1: 47478-53008 bp Neighborhood of RT #1 [47478, 53385] SMC_prok_B SMC_prok_B RVT_N RVT-GII GIIM Feature: gene Location: 47478-47942 bp Feature: gene Location: 48004-51096 bp Feature: domain Description: SMC_prok_B Location: 48064-48439 bp Feature: domain Description: SMC_prok_B Location: 48064-48439 bp Feature: domain Description: SMC_prok_B Location: 49471-50386 bp Feature: domain Description: SMC_prok_B Location: 49471 -50386 bp Feature: gene Location: 51733-53385 bp Feature: domain Description: RVT_N Location: 51787-52030 bp Feature: domain Description: RVT_N Location: 51 787-52030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52075-52723 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52075-52723 bp Feature: domain Description: GIIM Note: maturase Location: 52777-53008 bp Feature: domain Description: GIIM Note: maturase Location: 52777-53008 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SMC_prok_B (TIGR02168), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JVLQ01000092.1 Bacteroides fragilis strain 321_BFRA 724_49061_1022463_373+,...,670+, whole genome shotgun sequence (49061 bp)
Overview 1 RT 1: 645-4207 bp Neighborhood of RT #1 [645, 4207] RVT_N RVT-GII GIIM TraG-D_C Feature: gene Location: 645-2297 bp Feature: domain Description: RVT_N Location: 699-942 bp Feature: domain Description: RVT_N Location: 699-942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 987-1635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 987-1635 bp Feature: domain Description: GIIM Note: maturase Location: 1689-1920 bp Feature: domain Description: GIIM Note: maturase Location: 1689-192 0 bp Feature: gene Location: 2302-3507 bp Feature: domain Description: TraG-D_C Location: 2884-3217 bp Feature: domain Description: TraG-D_C Location: 2 884-32 17 bp Feature: gene Location: 3869-4207 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696)

Seq: JVLQ01000093.1 Bacteroides fragilis strain 321_BFRA 725_6986_204762_373+,143+, whole genome shotgun sequence (6986 bp)
Overview 1 RT 1: 645-5503 bp Neighborhood of RT #1 [645, 5503] RVT_N RVT-GII GIIM Feature: gene Location: 645-2297 bp Feature: domain Description: RVT_N Location: 699-942 bp Feature: domain Description: RVT_N Location: 699-942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 987-1635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 987-163 5 bp Feature: domain Description: GIIM Note: maturase Location: 1689-1920 bp Feature: domain Description: GIIM Note: maturase Location: 1689-1920 bp Feature: gene Location: 2302-3390 bp Feature: gene Location: 3401-5503 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JVLQ01000094.1 Bacteroides fragilis strain 321_BFRA 726_29937_715792_373+,...,208_, whole genome shotgun sequence (29937 bp)
Overview 1 RT 1: 645-4015 bp 2 RT 2: 19828-28988 bp Neighborhood of RT #1 [645, 4015] RVT_N RVT-GII GIIM TraG-D_C Neighborhood of RT #2 [19828, 29371] HTH_ARAC RVT_N RVT-GII GIIM N6_Mtase COG4646 Feature: gene Location: 645-2297 bp Feature: domain Description: RVT_N Location: 699-942 bp Feature: domain Description: RVT_N Location: 699-94 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 987-1635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 987-1635 bp Feature: domain Description: GIIM Note: maturase Location: 1689-1920 bp Feature: domain Description: GIIM Note: maturase Location: 1689-1920 bp Feature: gene Location: 2302-3507 bp Feature: domain Description: TraG-D_C Location: 2884-3214 bp Feature: domain Description: TraG-D_C Location: 2884 -3214 bp Feature: gene Location: 3602-4015 bp Feature: gene Location: 19828-20958 bp Feature: domain Description: HTH_ARAC Location: 20692-20938 bp Feature: domain Description: HTH_ARAC Location: 20692-20938 bp Feature: gene Location: 21128-22378 bp Feature: gene Location: 22332-23999 bp Feature: domain Description: RVT_N Location: 22386-22629 bp Feature: domain Description: RVT_N Location: 22386-22629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22674-23322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22674 -23322 bp Feature: domain Description: GIIM Note: maturase Location: 23376-23607 bp Feature: domain Description: GIIM Note: maturase Location: 23376-23607 bp Feature: gene Location: 23981-24295 bp Feature: gene Location: 24656-29371 bp Feature: domain Description: N6_Mtase Location: 24968-25568 bp Feature: domain Description: N6_Mtase Location: 24 968-25568 bp Feature: domain Description: COG4646 Location: 26978-28988 bp Feature: domain Description: COG4 64 6 Location: 26978-28988 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696), HTH_ARAC (smart00342), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )

Seq: JVLQ01000095.1 Bacteroides fragilis strain 321_BFRA 727_39414_1278958_373_,28+,445+, whole genome shotgun sequence (39414 bp)
Overview 1 RT 1: 122-2240 bp Neighborhood of RT #1 [122, 2240] RVT_N RVT-GII GIIM Feature: gene Location: 122-1774 bp Feature: domain Description: RVT_N Location: 176-419 bp Feature: domain Description: RVT_N Location: 176-419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1112 bp Feature: domain Description: GIIM Note: maturase Location: 1166-1397 bp Feature: domain Description: GIIM Note: maturase Location: 1166-1397 bp Feature: gene Location: 1881-2045 bp Feature: gene Location: 2091-2240 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JVLQ01000096.1 Bacteroides fragilis strain 321_BFRA 728_78904_1473850_373_,629+, whole genome shotgun sequence (78904 bp)
Overview 1 RT 1: 122-2240 bp Neighborhood of RT #1 [122, 2240] RVT_N RVT-GII GIIM Feature: gene Location: 122-1774 bp Feature: domain Description: RVT_N Location: 176-419 bp Feature: domain Description: RVT_N Location: 176 -419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46 4-1112 bp Feature: domain Description: GIIM Note: maturase Location: 1166-1397 bp Feature: domain Description: GIIM Note: maturase Location: 116 6 -1397 bp Feature: gene Location: 1856-2029 bp Feature: gene Location: 2091-2240 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JVLQ01000104.1 Bacteroides fragilis strain 321_BFRA 736_118837_2455373_440+,...,445+, whole genome shotgun sequence (118837 bp)
Overview 1 RT 1: 76108-85072 bp Neighborhood of RT #1 [76108, 85074] RNase_Z rpsA RVT-Retrons GlnA3 Feature: gene Location: 76108-77022 bp Feature: domain Description: RNase_Z Location: 76123-77014 bp Feature: domain Description: RNase_Z Location: 7 6123-7 7 014 bp Feature: gene Location: 77172-78965 bp Feature: domain Description: rpsA Location: 77250-78858 bp Feature: domain Description: rpsA Location: 7 7 250-7 8858 bp Feature: gene Location: 79107-80219 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 79422-79971 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7 9422-7 997 1 bp Feature: gene Location: 80426-82645 bp Feature: gene Location: 82885-85074 bp Feature: domain Description: GlnA3 Location: 82960-85072 bp Feature: domain Description: GlnA3 Location: 82960-8507 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RNase_Z (TIGR02651), rpsA (TIGR00717), RVT-Retrons, GlnA3 (COG3968)

Seq: JVLQ01000121.1 Bacteroides fragilis strain 321_BFRA 753_33861_636405_536+,673_, whole genome shotgun sequence (33861 bp)
Overview 1 RT 1: 30708-33665 bp Neighborhood of RT #1 [30708, 33736] DUF4134 DUF4134 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 30708-31031 bp Feature: domain Description: DUF4134 Location: 30732-31017 bp Feature: domain Description: DUF4134 Location: 30732-31017 bp Feature: gene Location: 31093-31383 bp Feature: domain Description: DUF4134 Location: 31168-31366 bp Feature: domain Description: DUF4134 Location: 31168 -31366 bp Feature: gene Location: 31925-33736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32189-33011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3218 9-33011 bp Feature: domain Description: Intron_maturas2 Location: 33200-33410 bp Feature: domain Description: Intron_maturas2 Location: 33200-33410 bp Feature: domain Description: HNHc Note: nucleases Location: 33560-33665 bp Feature: domain Description: HNHc Note: nucleases Location: 33560-33665 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JVLQ01000141.1 Bacteroides fragilis strain 321_BFRA 773_85009_1848170_668+,474+,445+, whole genome shotgun sequence (85009 bp)
Overview 1 RT 1: 51937-56632 bp Neighborhood of RT #1 [51937, 56664] RVT-CRISPR-like PRK07116 YurZ QdoI Feature: gene Location: 51937-52239 bp Feature: gene Location: 52229-53524 bp Feature: gene Location: 53648-54853 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 53834-54497 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 53834-5449 7 bp Feature: gene Location: 55263-55832 bp Feature: domain Description: PRK07116 Location: 55359-55827 bp Feature: domain Description: PRK07116 Location: 55359 -55827 bp Feature: gene Location: 55846-56664 bp Feature: domain Description: YurZ Location: 55921-56233 bp Feature: domain Description: YurZ Location: 559 21-56233 bp Feature: domain Description: QdoI Location: 56311-56632 bp Feature: domain Description: QdoI Location: 56311-56632 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, PRK07116 (flavodoxin; Provisional), YurZ (COG0599), QdoI (COG1917)

Seq: JVLQ01000143.1 Bacteroides fragilis strain 321_BFRA 775_112686_2307394_670_,75+,673+, whole genome shotgun sequence (112686 bp)
Overview 1 RT 1: 8377-9799 bp 2 RT 2: 109849-112685 bp Neighborhood of RT #1 [8377, 9799] RVT-GII HTH_28 Neighborhood of RT #2 [109849, 112685] DUF4133 DUF4134 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 8377-8739 bp Feature: gene Location: 8743-8952 bp Feature: gene Location: 8982-9179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8985-9177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8985-9177 bp Feature: gene Location: 9300-9590 bp Feature: domain Description: HTH_28 Location: 9324-9471 bp Feature: domain Description: HTH_28 Location: 9324-9471 bp Feature: gene Location: 9665-9799 bp Feature: gene Location: 109849-110145 bp Feature: domain Description: DUF4133 Location: 109891-110068 bp Feature: domain Description: DUF4133 Location: 10 9891-110 068 bp Feature: gene Location: 110158-110352 bp Feature: domain Description: DUF4134 Location: 110248-110338 bp Feature: domain Description: DUF4134 Location: 110 248-110 338 bp Feature: gene Location: 110377-112188 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110641-111463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110 641-111463 bp Feature: domain Description: Intron_maturas2 Location: 111652-111862 bp Feature: domain Description: Intron_maturas2 Location: 111652-111862 bp Feature: domain Description: HNHc Note: nucleases Location: 112012-112117 bp Feature: domain Description: HNHc Note: nucleases Location: 112012-112117 bp Feature: gene Location: 112368-112685 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_28 (pfam13518), DUF4133 (pfam13571), DUF4134 (pfam13572), Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JVLQ01000146.1 Bacteroides fragilis strain 321_BFRA 778_16549_351084_673+,592+, whole genome shotgun sequence (16549 bp)
Overview 1 RT 1: 126-2740 bp Neighborhood of RT #1 [126, 2757] RVT-GII Intron_maturas2 HNHc DUF4134 Feature: gene Location: 126-1937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 390-1212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 390-1212 bp Feature: domain Description: Intron_maturas2 Location: 1401-1611 bp Feature: domain Description: Intron_maturas2 Location: 1401-1611 bp Feature: domain Description: HNHc Note: nucleases Location: 1761-1866 bp Feature: domain Description: HNHc Note: nucleases Location: 1761-1866 bp Feature: gene Location: 2117-2467 bp Feature: gene Location: 2479-2757 bp Feature: domain Description: DUF4134 Location: 2539-2740 bp Feature: domain Description: DUF4134 Location: 2539-2740 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4134 (pfam13572)

Seq: JVLQ01000147.1 Bacteroides fragilis strain 321_BFRA 779_52506_1012698_673_,450+, whole genome shotgun sequence (52506 bp)
Overview 1 RT 1: 499-2762 bp Neighborhood of RT #1 [499, 2836] RVT-GII Intron_maturas2 HNHc DUF4134 DUF4133 Feature: gene Location: 499-2310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 763-1585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 763-1585 bp Feature: domain Description: Intron_maturas2 Location: 1774-1984 bp Feature: domain Description: Intron_maturas2 Location: 1774-1984 bp Feature: domain Description: HNHc Note: nucleases Location: 2134-2239 bp Feature: domain Description: HNHc Note: nucleases Location: 2134-2239 bp Feature: gene Location: 2335-2529 bp Feature: domain Description: DUF4134 Location: 2425-2515 bp Feature: domain Description: DUF4134 Location: 2425-2515 bp Feature: gene Location: 2543-2836 bp Feature: domain Description: DUF4133 Location: 2582-2762 bp Feature: domain Description: DUF4133 Location: 2582-2762 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4134 (pfam13572), DUF4133 (pfam13571)