myRT

myRT report for GCA_001056365.1_ASM105636v1

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Seq: JVLD01000360.1 Burkholderia cenocepacia strain 335_BMUL 2993_63479_834124_1111_,...,2047_, whole genome shotgun sequence (63479 bp)
Overview 1 RT 1: 56609-62114 bp Neighborhood of RT #1 [56609, 62137] his_ut_repres FIN RVT-Retrons Histone_HNS MFS_MucK Feature: gene Location: 56609-57526 bp Feature: domain Description: his_ut_repres Location: 56849-57521 bp Feature: domain Description: his_ut_repres Location: 56849-57521 bp Feature: gene Location: 57845-58333 bp Feature: domain Description: FIN Location: 57941-58298 bp Feature: domain Description: FIN Location: 57941 -58298 bp Feature: gene Location: 58587-59936 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 59052-59688 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 59052-59688 bp Feature: gene Location: 60241-60591 bp Feature: domain Description: Histone_HNS Location: 60283-60520 bp Feature: domain Description: Histone_HNS Location: 60283-60520 bp Feature: gene Location: 60902-62137 bp Feature: domain Description: MFS_MucK Location: 60980-62114 bp Feature: domain Description: MFS_MucK Location: 60980-621 1 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816), MFS_MucK (cd17371)

Seq: JVLD01000400.1 Burkholderia cenocepacia strain 335_BMUL 3033_13531_165460_1492+,547+,1481+, whole genome shotgun sequence (13531 bp)
Overview 1 RT 1: 9936-13185 bp Neighborhood of RT #1 [9936, 13343] Gmd GDP_MD_SDR_e RVT-GII GIIM Feature: gene Location: 9936-10982 bp Feature: domain Description: Gmd Location: 9951-10968 bp Feature: domain Description: Gmd Location: 9951-10968 bp Feature: gene Location: 11044-11934 bp Feature: domain Description: GDP_MD_SDR_e Location: 11047-11902 bp Feature: domain Description: GDP_MD_SDR_e Location: 11047-11902 bp Feature: gene Location: 12054-13343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12309-12924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 309-12 92 4 bp Feature: domain Description: GIIM Note: maturase Location: 12984-13185 bp Feature: domain Description: GIIM Note: maturase Location: 12 984-13185 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDP_MD_SDR_e (cd05260), RVT-GII, GIIM (pfam08388), Gmd (COG1089)

Seq: JVLD01000481.1 Burkholderia cenocepacia strain 335_BMUL 3115_2958_97321_2288+,...,1025+, whole genome shotgun sequence (2958 bp)
Overview 1 RT 1: 63-2603 bp Neighborhood of RT #1 [63, 2659] RVT-GII GIIM COG3547 Feature: gene Location: 63-1460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 396-1014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 96-1014 bp Feature: domain Description: GIIM Note: maturase Location: 1065-1275 bp Feature: domain Description: GIIM Note: maturase Location: 1065-1275 bp Feature: gene Location: 1625-2659 bp Feature: domain Description: COG3547 Location: 1640-2603 bp Feature: domain Description: COG3 547 Location: 1640-2603 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: JVLD01000482.1 Burkholderia cenocepacia strain 335_BMUL 3116_6182_164350_2288_,...,2091+, whole genome shotgun sequence (6182 bp)
Overview 1 RT 1: 3-2855 bp Neighborhood of RT #1 [3, 2860] RVT-GII GIIM RutF PRK09121 Feature: gene Location: 3-845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-399 bp Feature: domain Description: GIIM Note: maturase Location: 450-660 bp Feature: domain Description: GIIM Note: maturase Location: 4 50-660 bp Feature: gene Location: 1182-1730 bp Feature: domain Description: RutF Location: 1248-1710 bp Feature: domain Description: RutF Location: 124 8-1710 bp Feature: gene Location: 1832-2860 bp Feature: domain Description: PRK09121 Location: 1844-2855 bp Feature: domain Description: PRK09121 Location: 184 4 -2855 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RutF (TIGR03615), PRK09121 (methionine synthase), RVT-GII, GIIM (pfam08388)

Seq: JVLD01000483.1 Burkholderia cenocepacia strain 335_BMUL 3117_14073_160041_2288_,...,174+, whole genome shotgun sequence (14073 bp)
Overview 1 RT 1: 3-2021 bp Neighborhood of RT #1 [3, 2021] RVT-GII GIIM DHFR_1 Feature: gene Location: 3-845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-399 bp Feature: domain Description: GIIM Note: maturase Location: 450-660 bp Feature: domain Description: GIIM Note: maturase Location: 45 0-660 bp Feature: gene Location: 931-1431 bp Feature: domain Description: DHFR_1 Location: 943-1420 bp Feature: domain Description: DHFR_1 Location: 943-1420 bp Feature: gene Location: 1722-2021 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DHFR_1 (pfam00186)