myRT

myRT report for GCA_001056515.1_ASM105651v1

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Seq: JVJM01000201.1 Enterococcus faecium strain 377_EFCM 1017_10636_136353, whole genome shotgun sequence (10636 bp)
Overview 1 RT 1: 3-5270 bp Neighborhood of RT #1 [3, 5278] RVT-GII GIIM CE4_DAC_u3_5s PRK13354 Feature: gene Location: 3-173 bp Feature: gene Location: 660-2048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 981-1596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 981 -1 596 bp Feature: domain Description: GIIM Note: maturase Location: 1653-1869 bp Feature: domain Description: GIIM Note: maturase Location: 1 653-1 869 bp Feature: gene Location: 2141-3577 bp Feature: domain Description: CE4_DAC_u3_5s Location: 2945-3338 bp Feature: domain Description: CE4_DAC_u3_5s Location: 2945-3338 bp Feature: gene Location: 4022-5278 bp Feature: domain Description: PRK13354 Location: 4025-5270 bp Feature: domain Description: PRK1 3354 Location: 4025-5270 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), CE4_DAC_u3_5s (cd10972), PRK13354 (tyrosyl-tRNA synthetase; Provisional)

Seq: JVJM01000314.1 Enterococcus faecium strain 377_EFCM 1587_4410_224504_285+,...,1518+, whole genome shotgun sequence (4410 bp)
Overview 1 RT 1: 92-4291 bp Neighborhood of RT #1 [92, 4314] HsdM RVT-AbiP2 Tra8 Feature: gene Location: 92-1570 bp Feature: domain Description: HsdM Location: 113-1538 bp Feature: domain Description: HsdM Location: 113-1538 bp Feature: gene Location: 1908-3383 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2256-2721 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2 2 56-2 72 1 bp Feature: gene Location: 3361-4314 bp Feature: domain Description: Tra8 Location: 3364-4291 bp Feature: domain Description: Tra8 Location: 3364-42 91 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), RVT-AbiP2, Tra8 (COG2826)

Seq: JVJM01000329.1 Enterococcus faecium strain 377_EFCM 1602_3891_111180_514+,1200_, whole genome shotgun sequence (3891 bp)
Overview 1 RT 1: 1-2950 bp Neighborhood of RT #1 [1, 3777] AAA_10 RVT-GII Feature: gene Location: 1-1254 bp Feature: domain Description: AAA_10 Location: 1033-1219 bp Feature: domain Description: AAA_10 Location: 103 3 -1219 bp Feature: gene Location: 1951-3777 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2251-2950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2251-2950 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_10 (pfam12846), RVT-GII

Seq: JVJM01000330.1 Enterococcus faecium strain 377_EFCM 1603_5381_125437_535+,1200_, whole genome shotgun sequence (5381 bp)
Overview 1 RT 1: 818-4440 bp Neighborhood of RT #1 [818, 5267] TcpE AAA_10 RVT-GII Feature: gene Location: 818-1207 bp Feature: domain Description: TcpE Location: 836-1136 bp Feature: domain Description: TcpE Location: 836-1136 bp Feature: gene Location: 1194-2744 bp Feature: domain Description: AAA_10 Location: 2523-2706 bp Feature: domain Description: AAA_10 Location: 2523-2706 bp Feature: gene Location: 3441-5267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3741-4440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 374 1-4 4 4 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TcpE (pfam12648), AAA_10 (pfam12846), RVT-GII

Seq: JVJM01000341.1 Enterococcus faecium strain 377_EFCM 1616_13498_222843_806+,1200+, whole genome shotgun sequence (13498 bp)
Overview 1 RT 1: 7746-11927 bp Neighborhood of RT #1 [7746, 12754] AAA_10 RVT-GII Feature: gene Location: 7746-9869 bp Feature: gene Location: 9874-10794 bp Feature: domain Description: AAA_10 Location: 9880-10759 bp Feature: domain Description: AAA_10 Location: 9880-1075 9 bp Feature: gene Location: 10928-12754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11228-11927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11228-11927 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_10 (pfam12846), RVT-GII

Seq: JVJM01000343.1 Enterococcus faecium strain 377_EFCM 1618_7025_136592_825+,497+,918+, whole genome shotgun sequence (7025 bp)
Overview 1 RT 1: 2685-6776 bp Neighborhood of RT #1 [2685, 6895] HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc Feature: gene Location: 2685-2828 bp Feature: gene Location: 2921-4105 bp Feature: domain Description: HTH_XRE Location: 2951-3095 bp Feature: domain Description: HTH_XRE Location: 2951-3095 bp Feature: domain Description: Rol_Rep_N Location: 3128-3392 bp Feature: domain Description: Rol_Rep_N Location: 3128-3392 bp Feature: domain Description: Rep_trans Location: 3416-4028 bp Feature: domain Description: Rep_trans Location: 3416 -4028 bp Feature: gene Location: 4985-6895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5318-6056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5318-6 056 bp Feature: domain Description: HNHc Note: nucleases Location: 6611-6776 bp Feature: domain Description: HNHc Note: nucleases Location: 6 6 11-6 776 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), RVT-GII, HNHc (smart00507)

Seq: JVJM01000363.1 Enterococcus faecium strain 377_EFCM 1639_11746_200435_1179+,1200+, whole genome shotgun sequence (11746 bp)
Overview 1 RT 1: 5939-10175 bp Neighborhood of RT #1 [5939, 11002] AAA_10 RVT-GII Feature: gene Location: 5939-8122 bp Feature: gene Location: 8125-9042 bp Feature: domain Description: AAA_10 Location: 8131-9010 bp Feature: domain Description: AAA_10 Location: 8131-9010 bp Feature: gene Location: 9176-11002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9476-10175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 947 6-1017 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_10 (pfam12846), RVT-GII

Seq: JVJM01000138.1 Enterococcus faecium strain 377_EFCM 668_2714_92873, whole genome shotgun sequence (2714 bp)
Overview 1 RT 1: 384-2476 bp Neighborhood of RT #1 [384, 2592] RVT-GII HNHc Feature: gene Location: 384-614 bp Feature: gene Location: 733-2592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1042-1783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1042-178 3 bp Feature: domain Description: HNHc Note: nucleases Location: 2338-2476 bp Feature: domain Description: HNHc Note: nucleases Location: 2338 -2476 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: JVJM01000181.1 Enterococcus faecium strain 377_EFCM 930_7927_99702, whole genome shotgun sequence (7927 bp)
Overview 1 RT 1: 1-3315 bp Neighborhood of RT #1 [1, 3323] RVT-AbiP2 AlbA_2 PRK09290 Feature: gene Location: 1-1488 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 400-856 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 400-856 bp Feature: gene Location: 1634-1948 bp Feature: domain Description: AlbA_2 Location: 1673-1844 bp Feature: domain Description: AlbA_2 Location: 1673-1844 bp Feature: gene Location: 2049-3323 bp Feature: domain Description: PRK09290 Location: 2067-3315 bp Feature: domain Description: PRK09 29 0 Location: 2067-3315 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2, AlbA_2 (pfam04326), PRK09290 (allantoate amidohydrolase; Reviewed)