myRT

myRT report for GCA_001056605.1_ASM105660v1

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Seq: JVIG01000105.1 Enterococcus faecium strain 41_EFCM 1232_16926_367593_59+,319_, whole genome shotgun sequence (16926 bp)
Overview 1 RT 1: 13064-16688 bp Neighborhood of RT #1 [13064, 16804] FtsK RVT-GII HNHc Feature: gene Location: 13064-14230 bp Feature: domain Description: FtsK Location: 13745-14210 bp Feature: domain Description: FtsK Location: 1 3745-1 421 0 bp Feature: gene Location: 14596-14826 bp Feature: gene Location: 14945-16804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15254-15995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5254-1 5995 bp Feature: domain Description: HNHc Note: nucleases Location: 16550-16688 bp Feature: domain Description: HNHc Note: nucleases Location: 1 6550-1 6688 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FtsK (COG1674), RVT-GII, HNHc (smart00507)

Seq: JVIG01000119.1 Enterococcus faecium strain 41_EFCM 1246_8098_310323_113+,795+,611_, whole genome shotgun sequence (8098 bp)
Overview 1 RT 1: 721-7157 bp Neighborhood of RT #1 [721, 7984] RVT-GII HNHc ArdA TcpE AAA_10 RVT-GII Feature: gene Location: 721-2631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1054-1792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1054-1792 bp Feature: domain Description: HNHc Note: nucleases Location: 2347-2512 bp Feature: domain Description: HNHc Note: nucleases Location: 2 347-2 512 bp Feature: gene Location: 2819-2959 bp Feature: gene Location: 2972-3475 bp Feature: domain Description: ArdA Location: 2990-3461 bp Feature: domain Description: ArdA Location: 2 990-3461 bp Feature: gene Location: 3535-3924 bp Feature: domain Description: TcpE Location: 3553-3853 bp Feature: domain Description: TcpE Location: 3553-3853 bp Feature: gene Location: 3911-5461 bp Feature: domain Description: AAA_10 Location: 5240-5423 bp Feature: domain Description: AAA_10 Location: 52 40-542 3 bp Feature: gene Location: 6158-7984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6458-7157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6458-7157 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), ArdA (pfam07275), TcpE (pfam12648), AAA_10 (pfam12846)

Seq: JVIG01000126.1 Enterococcus faecium strain 41_EFCM 1253_4518_150605_154+,113+, whole genome shotgun sequence (4518 bp)
Overview 1 RT 1: 2-4269 bp Neighborhood of RT #1 [2, 4388] HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc Feature: gene Location: 2-310 bp Feature: gene Location: 489-1694 bp Feature: domain Description: HTH_XRE Location: 534-678 bp Feature: domain Description: HTH_XRE Location: 53 4-678 bp Feature: domain Description: Rol_Rep_N Location: 705-972 bp Feature: domain Description: Rol_Rep_N Location: 705-972 bp Feature: domain Description: Rep_trans Location: 996-1605 bp Feature: domain Description: Rep_trans Location: 996-1605 bp Feature: gene Location: 2478-4388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2811-3549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2811-3 549 bp Feature: domain Description: HNHc Note: nucleases Location: 4104-4269 bp Feature: domain Description: HNHc Note: nucleases Location: 4104-4269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), RVT-GII, HNHc (smart00507)

Seq: JVIG01000142.1 Enterococcus faecium strain 41_EFCM 1269_18977_425233_319+,941+,662_, whole genome shotgun sequence (18977 bp)
Overview 1 RT 1: 123-3822 bp Neighborhood of RT #1 [123, 3842] RVT-GII HNHc FtsK Feature: gene Location: 123-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 432-1173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 32-1173 bp Feature: domain Description: HNHc Note: nucleases Location: 1728-1866 bp Feature: domain Description: HNHc Note: nucleases Location: 1728-1866 bp Feature: gene Location: 2101-2331 bp Feature: gene Location: 2697-3842 bp Feature: domain Description: FtsK Location: 3306-3822 bp Feature: domain Description: FtsK Location: 3306-3822 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), FtsK (COG1674)

Seq: JVIG01000143.1 Enterococcus faecium strain 41_EFCM 1270_9695_329297_319_,99+,113+, whole genome shotgun sequence (9695 bp)
Overview 1 RT 1: 384-9446 bp Neighborhood of RT #1 [384, 9565] RVT-GII HNHc Zeta_toxin HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc Feature: gene Location: 384-614 bp Feature: gene Location: 733-2592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1042-1783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1042-1783 bp Feature: domain Description: HNHc Note: nucleases Location: 2338-2476 bp Feature: domain Description: HNHc Note: nucleases Location: 2338-2476 bp Feature: gene Location: 2686-2925 bp Feature: gene Location: 3003-3677 bp Feature: domain Description: Zeta_toxin Location: 3102-3585 bp Feature: domain Description: Zeta_toxin Location: 3102-35 85 bp Feature: gene Location: 5355-5498 bp Feature: gene Location: 5591-6775 bp Feature: domain Description: HTH_XRE Location: 5621-5765 bp Feature: domain Description: HTH_XRE Location: 5 621-5 765 bp Feature: domain Description: Rol_Rep_N Location: 5798-6062 bp Feature: domain Description: Rol_Rep_N Location: 5 798-6062 bp Feature: domain Description: Rep_trans Location: 6086-6698 bp Feature: domain Description: Rep_trans Location: 6086-6698 bp Feature: gene Location: 7655-9565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7988-8726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7988-8726 bp Feature: domain Description: HNHc Note: nucleases Location: 9281-9446 bp Feature: domain Description: HNHc Note: nucleases Location: 9281-9446 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), Zeta_toxin (pfam06414), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486)

Seq: JVIG01000172.1 Enterococcus faecium strain 41_EFCM 1299_5519_183178_611+,580+, whole genome shotgun sequence (5519 bp)
Overview 1 RT 1: 115-5137 bp Neighborhood of RT #1 [115, 5151] RVT-GII AAA_10 ArdA Feature: gene Location: 115-1899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 373-1072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 373-1072 bp Feature: gene Location: 2638-4242 bp Feature: domain Description: AAA_10 Location: 4021-4207 bp Feature: domain Description: AAA_10 Location: 4021-4207 bp Feature: gene Location: 4654-5151 bp Feature: domain Description: ArdA Location: 4672-5137 bp Feature: domain Description: ArdA Location: 46 72-5137 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, AAA_10 (pfam12846), ArdA (pfam07275)

Seq: JVIG01000173.1 Enterococcus faecium strain 41_EFCM 1300_14081_340086_611_,443+, whole genome shotgun sequence (14081 bp)
Overview 1 RT 1: 745-5808 bp Neighborhood of RT #1 [745, 5808] RVT-GII AAA_10 Feature: gene Location: 745-2571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1045-1744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1045-17 44 bp Feature: gene Location: 2705-3622 bp Feature: domain Description: AAA_10 Location: 2711-3590 bp Feature: domain Description: AAA_10 Location: 27 11-3590 bp Feature: gene Location: 3625-5808 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, AAA_10 (pfam12846)

Seq: JVIG01000174.1 Enterococcus faecium strain 41_EFCM 1301_13508_333429_611_,1181+, whole genome shotgun sequence (13508 bp)
Overview 1 RT 1: 745-5753 bp Neighborhood of RT #1 [745, 5753] RVT-GII AAA_10 Feature: gene Location: 745-2571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1045-1744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1045-1744 bp Feature: gene Location: 2705-3625 bp Feature: domain Description: AAA_10 Location: 2711-3590 bp Feature: domain Description: AAA_10 Location: 2711-3590 bp Feature: gene Location: 3630-5753 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, AAA_10 (pfam12846)

Seq: JVIG01000204.1 Enterococcus faecium strain 41_EFCM 1331_3765_185816_951+,71_, whole genome shotgun sequence (3765 bp)
Overview 1 RT 1: 20-3739 bp Neighborhood of RT #1 [20, 3762] HsdM RVT-AbiP2 Tra8 Feature: gene Location: 20-1498 bp Feature: domain Description: HsdM Location: 41-1466 bp Feature: domain Description: HsdM Location: 41-1466 bp Feature: gene Location: 1836-3311 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2184-2649 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2184-2649 bp Feature: gene Location: 3289-3762 bp Feature: domain Description: Tra8 Location: 3292-3739 bp Feature: domain Description: Tra8 Location: 329 2-3739 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), RVT-AbiP2, Tra8 (COG2826)

Seq: JVIG01000212.1 Enterococcus faecium strain 41_EFCM 1339_37558_755471_1001_,...,297_, whole genome shotgun sequence (37558 bp)
Overview 1 RT 1: 14105-20937 bp Neighborhood of RT #1 [14105, 20945] CcmA AcrR RVT-GII GIIM CE4_DAC_u3_5s PRK13354 Feature: gene Location: 14105-14986 bp Feature: domain Description: CcmA Location: 14108-14978 bp Feature: domain Description: CcmA Location: 1410 8-14978 bp Feature: gene Location: 15240-15839 bp Feature: domain Description: AcrR Location: 15258-15744 bp Feature: domain Description: AcrR Location: 15258-15744 bp Feature: gene Location: 16326-17714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16647-17262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16647-17262 bp Feature: domain Description: GIIM Note: maturase Location: 17319-17535 bp Feature: domain Description: GIIM Note: maturase Location: 17319-17535 bp Feature: gene Location: 17807-19039 bp Feature: domain Description: CE4_DAC_u3_5s Location: 18407-18800 bp Feature: domain Description: CE4_DAC_u3_5s Location: 18407-18800 bp Feature: gene Location: 19689-20945 bp Feature: domain Description: PRK13354 Location: 19692-20937 bp Feature: domain Description: PRK13354 Location: 19692-20937 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CcmA (COG4133), AcrR (COG1309), RVT-GII, GIIM (pfam08388), CE4_DAC_u3_5s (cd10972), PRK13354 (tyrosyl-tRNA synthetase; Provisional)

Seq: JVIG01000035.1 Enterococcus faecium strain 41_EFCM 506_11363_200056, whole genome shotgun sequence (11363 bp)
Overview 1 RT 1: 4615-8919 bp Neighborhood of RT #1 [4615, 8919] PRK09290 AlbA_2 RVT-AbiP2 DUF3841 Feature: gene Location: 4615-5889 bp Feature: domain Description: PRK09290 Location: 4633-5881 bp Feature: domain Description: PRK09290 Location: 4633-5881 bp Feature: gene Location: 5990-6304 bp Feature: domain Description: AlbA_2 Location: 6029-6200 bp Feature: domain Description: AlbA_2 Location: 6029-6200 bp Feature: gene Location: 6450-7946 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 6858-7314 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 6858-7314 bp Feature: gene Location: 8124-8603 bp Feature: domain Description: DUF3841 Location: 8133-8508 bp Feature: domain Description: DUF3841 Location: 8133-8508 bp Feature: gene Location: 8770-8919 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09290 (allantoate amidohydrolase; Reviewed), AlbA_2 (pfam04326), RVT-AbiP2, DUF3841 (pfam12952)