myRT

myRT report for GCA_001056655.1_ASM105665v1

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Seq: JVIA01000039.1 Burkholderia cenocepacia strain 415_BMUL 1109_248365_5009701_186+,...,7_, whole genome shotgun sequence (248365 bp)
Overview 1 RT 1: 118501-124006 bp Neighborhood of RT #1 [118501, 124029] his_ut_repres FIN RVT-Retrons Histone_HNS MFS_MucK Feature: gene Location: 118501-119418 bp Feature: domain Description: his_ut_repres Location: 118741-119413 bp Feature: domain Description: his_ut_repres Location: 1 1 8741 -1 1 941 3 bp Feature: gene Location: 119737-120225 bp Feature: domain Description: FIN Location: 119833-120190 bp Feature: domain Description: FIN Location: 1 1 9833-1 201 90 bp Feature: gene Location: 120479-121828 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 120944-121580 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 20944-1 21 580 bp Feature: gene Location: 122133-122483 bp Feature: domain Description: Histone_HNS Location: 122175-122412 bp Feature: domain Description: Histone_HNS Location: 1 221 75-1 2241 2 bp Feature: gene Location: 122794-124029 bp Feature: domain Description: MFS_MucK Location: 122872-124006 bp Feature: domain Description: MFS_MucK Location: 1 22872-1 24006 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816), MFS_MucK (cd17371)

Seq: JVIA01000105.1 Burkholderia cenocepacia strain 415_BMUL 1180_6859_244075_803+,620+,186_, whole genome shotgun sequence (6859 bp)
Overview 1 RT 1: 125-3532 bp Neighborhood of RT #1 [125, 3537] RVT-GII GIIM RutF PRK09121 Feature: gene Location: 125-1522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 458-1076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 458-1076 bp Feature: domain Description: GIIM Note: maturase Location: 1127-1337 bp Feature: domain Description: GIIM Note: maturase Location: 112 7-1337 bp Feature: gene Location: 1859-2407 bp Feature: domain Description: RutF Location: 1925-2387 bp Feature: domain Description: RutF Location: 192 5-2 387 bp Feature: gene Location: 2509-3537 bp Feature: domain Description: PRK09121 Location: 2521-3532 bp Feature: domain Description: PRK0912 1 Location: 2 52 1-3532 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RutF (TIGR03615), PRK09121 (methionine synthase)

Seq: JVIA01000111.1 Burkholderia cenocepacia strain 415_BMUL 1188_2958_134924_915+,803+, whole genome shotgun sequence (2958 bp)
Overview 1 RT 1: 300-2711 bp Neighborhood of RT #1 [300, 2896] COG3547 RVT-GII GIIM Feature: gene Location: 300-1334 bp Feature: domain Description: COG3547 Location: 315-1278 bp Feature: domain Description: COG3 547 Location: 3 15-1278 bp Feature: gene Location: 1499-2896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1832-2450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 183 2-2450 bp Feature: domain Description: GIIM Note: maturase Location: 2501-2711 bp Feature: domain Description: GIIM Note: maturase Location: 2501-2711 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: JVIA01000126.1 Burkholderia cenocepacia strain 415_BMUL 1204_92104_1713231_987_,...,915_, whole genome shotgun sequence (92104 bp)
Overview 1 RT 1: 87115-91749 bp Neighborhood of RT #1 [87115, 91805] Gmd GDP_MD_SDR_e RVT-GII GIIM COG3547 Feature: gene Location: 87115-88161 bp Feature: domain Description: Gmd Location: 87130-88147 bp Feature: domain Description: Gmd Location: 87130-8814 7 bp Feature: gene Location: 88223-89113 bp Feature: domain Description: GDP_MD_SDR_e Location: 88226-89081 bp Feature: domain Description: GDP_MD_SDR_e Location: 88226-89081 bp Feature: gene Location: 89233-90522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89488-90103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 894 88-90103 bp Feature: domain Description: GIIM Note: maturase Location: 90163-90364 bp Feature: domain Description: GIIM Note: maturase Location: 90163-90364 bp Feature: gene Location: 90771-91805 bp Feature: domain Description: COG3547 Location: 90786-91749 bp Feature: domain Description: COG354 7 Location: 90786-9174 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gmd (COG1089), GDP_MD_SDR_e (cd05260), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: JVIA01000154.1 Burkholderia cenocepacia strain 415_BMUL 1232_69632_1319633_85+,...,803_, whole genome shotgun sequence (69632 bp)
Overview 1 RT 1: 66935-69182 bp Neighborhood of RT #1 [66935, 69367] DHFR_1 RVT-GII GIIM Feature: gene Location: 66935-67234 bp Feature: gene Location: 67525-68025 bp Feature: domain Description: DHFR_1 Location: 67537-68014 bp Feature: domain Description: DHFR_1 Location: 675 37-68014 bp Feature: gene Location: 68111-69367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68303-68921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68303-68921 bp Feature: domain Description: GIIM Note: maturase Location: 68972-69182 bp Feature: domain Description: GIIM Note: maturase Location: 68972-69182 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DHFR_1 (pfam00186), RVT-GII, GIIM (pfam08388)