myRT

myRT report for GCA_001056705.1_ASM105670v1

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Seq: JVHQ01000081.1 Burkholderia cenocepacia strain 423_BMUL 1958_2666_72813_504+,1299+, whole genome shotgun sequence (2666 bp)
Overview 1 RT 1: 8-2419 bp Neighborhood of RT #1 [8, 2604] COG3547 RVT-GII GIIM Feature: gene Location: 8-1042 bp Feature: domain Description: COG3547 Location: 23-986 bp Feature: domain Description: COG3547 Location: 23-986 bp Feature: gene Location: 1207-2604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1540-2158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 540-21 58 bp Feature: domain Description: GIIM Note: maturase Location: 2209-2419 bp Feature: domain Description: GIIM Note: maturase Location: 2209-241 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: JVHQ01000082.1 Burkholderia cenocepacia strain 423_BMUL 1959_14643_192849_504+,1300+,1557_, whole genome shotgun sequence (14643 bp)
Overview 1 RT 1: 8-4684 bp Neighborhood of RT #1 [8, 4698] COG3547 RVT-GII GIIM GDP_MD_SDR_e Gmd Feature: gene Location: 8-1042 bp Feature: domain Description: COG3547 Location: 23-986 bp Feature: domain Description: COG3547 Location: 2 3-986 bp Feature: gene Location: 1291-2580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1546-2161 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1546-2 161 bp Feature: domain Description: GIIM Note: maturase Location: 2221-2422 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 2 1-2 42 2 bp Feature: gene Location: 2700-3590 bp Feature: domain Description: GDP_MD_SDR_e Location: 2703-3558 bp Feature: domain Description: GDP_MD_SDR_e Location: 2 703-3558 bp Feature: gene Location: 3652-4698 bp Feature: domain Description: Gmd Location: 3667-4684 bp Feature: domain Description: Gmd Location: 3667-4684 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), GDP_MD_SDR_e (cd05260), Gmd (COG1089), COG3547 (Transposase )

Seq: JVHQ01000180.1 Burkholderia cenocepacia strain 423_BMUL 2060_6849_159268_1299+,652+,1380_, whole genome shotgun sequence (6849 bp)
Overview 1 RT 1: 115-3522 bp Neighborhood of RT #1 [115, 3527] RVT-GII GIIM RutF PRK09121 Feature: gene Location: 115-1512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 448-1066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 448-1066 bp Feature: domain Description: GIIM Note: maturase Location: 1117-1327 bp Feature: domain Description: GIIM Note: maturase Location: 1117-13 27 bp Feature: gene Location: 1849-2397 bp Feature: domain Description: RutF Location: 1915-2377 bp Feature: domain Description: RutF Location: 1915-23 77 bp Feature: gene Location: 2499-3527 bp Feature: domain Description: PRK09121 Location: 2511-3522 bp Feature: domain Description: PRK09121 Location: 2511-3 522 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RutF (TIGR03615), PRK09121 (methionine synthase)

Seq: JVHQ01000187.1 Burkholderia cenocepacia strain 423_BMUL 2067_125608_1664971_1380+,...,642_, whole genome shotgun sequence (125685 bp)
Overview 1 RT 1: 118604-124109 bp Neighborhood of RT #1 [118604, 124132] his_ut_repres FIN RVT-Retrons Histone_HNS MFS_MucK Feature: gene Location: 118604-119521 bp Feature: domain Description: his_ut_repres Location: 118844-119516 bp Feature: domain Description: his_ut_repres Location: 11884 4 -119516 bp Feature: gene Location: 119840-120328 bp Feature: domain Description: FIN Location: 119936-120293 bp Feature: domain Description: FIN Location: 119936-120293 bp Feature: gene Location: 120582-121931 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 121047-121683 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12104 7-121683 bp Feature: gene Location: 122236-122586 bp Feature: domain Description: Histone_HNS Location: 122278-122515 bp Feature: domain Description: Histone_HNS Location: 122278-122515 bp Feature: gene Location: 122897-124132 bp Feature: domain Description: MFS_MucK Location: 122975-124109 bp Feature: domain Description: MFS_MucK Location: 122975-124 109 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816), MFS_MucK (cd17371)

Seq: JVHQ01000192.1 Burkholderia cenocepacia strain 423_BMUL 2073_18016_205079_1415+,1299_, whole genome shotgun sequence (18016 bp)
Overview 1 RT 1: 15329-17576 bp Neighborhood of RT #1 [15329, 17761] DHFR_1 RVT-GII GIIM Feature: gene Location: 15329-15628 bp Feature: gene Location: 15919-16419 bp Feature: domain Description: DHFR_1 Location: 15931-16408 bp Feature: domain Description: DHFR_1 Location: 15 931-16408 bp Feature: gene Location: 16505-17761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16697-17315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16697-17315 bp Feature: domain Description: GIIM Note: maturase Location: 17366-17576 bp Feature: domain Description: GIIM Note: maturase Location: 17366-175 76 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DHFR_1 (pfam00186), RVT-GII, GIIM (pfam08388)