myRT

myRT report for GCA_001056745.1_ASM105674v1

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Seq: JVHJ01000198.1 Enterococcus faecium strain 43_EFCM 1300_11343_152572, whole genome shotgun sequence (11343 bp)
Overview 1 RT 1: 2435-6731 bp Neighborhood of RT #1 [2435, 6739] DUF3841 RVT-AbiP2 AlbA_2 PRK09290 Feature: gene Location: 2435-2584 bp Feature: gene Location: 2751-3230 bp Feature: domain Description: DUF3841 Location: 2760-3135 bp Feature: domain Description: DUF3841 Location: 2760-31 35 bp Feature: gene Location: 3408-4904 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 3816-4272 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 381 6-4272 bp Feature: gene Location: 5050-5364 bp Feature: domain Description: AlbA_2 Location: 5089-5260 bp Feature: domain Description: AlbA_2 Location: 5089-5260 bp Feature: gene Location: 5465-6739 bp Feature: domain Description: PRK09290 Location: 5483-6731 bp Feature: domain Description: PRK09290 Location: 5483-6731 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3841 (pfam12952), RVT-AbiP2, AlbA_2 (pfam04326), PRK09290 (allantoate amidohydrolase; Reviewed)

Seq: JVHJ01000261.1 Enterococcus faecium strain 43_EFCM 1560_3755_107842_215_,1002+, whole genome shotgun sequence (3755 bp)
Overview 1 RT 1: 1-3714 bp Neighborhood of RT #1 [1, 3746] Tra8 RVT-AbiP2 HsdM Feature: gene Location: 1-477 bp Feature: domain Description: Tra8 Location: 4-454 bp Feature: domain Description: Tra8 Location: 4-454 bp Feature: gene Location: 455-1930 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 803-1268 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 803-12 68 bp Feature: gene Location: 2268-3746 bp Feature: domain Description: HsdM Location: 2289-3714 bp Feature: domain Description: HsdM Location: 2 2 89-3714 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra8 (COG2826), RVT-AbiP2, HsdM (COG0286)

Seq: JVHJ01000270.1 Enterococcus faecium strain 43_EFCM 1569_7025_143253_392+,736_, whole genome shotgun sequence (7025 bp)
Overview 1 RT 1: 131-4028 bp Neighborhood of RT #1 [131, 4105] RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans Feature: gene Location: 131-2041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1202 bp Feature: domain Description: HNHc Note: nucleases Location: 1757-1922 bp Feature: domain Description: HNHc Note: nucleases Location: 1757-1922 bp Feature: gene Location: 2550-2699 bp Feature: gene Location: 2921-4105 bp Feature: domain Description: HTH_XRE Location: 2951-3095 bp Feature: domain Description: HTH_XRE Location: 2951-3 095 bp Feature: domain Description: Rol_Rep_N Location: 3128-3392 bp Feature: domain Description: Rol_Rep_N Location: 3 128-3 3 92 bp Feature: domain Description: Rep_trans Location: 3416-4028 bp Feature: domain Description: Rep_trans Location: 3 416-4028 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486)

Seq: JVHJ01000277.1 Enterococcus faecium strain 43_EFCM 1576_20591_338793_503+,457+,669+, whole genome shotgun sequence (20591 bp)
Overview 1 RT 1: 108-5569 bp Neighborhood of RT #1 [108, 5589] HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc FtsK Feature: gene Location: 108-1313 bp Feature: domain Description: HTH_XRE Location: 153-297 bp Feature: domain Description: HTH_XRE Location: 153-297 bp Feature: domain Description: Rol_Rep_N Location: 324-591 bp Feature: domain Description: Rol_Rep_N Location: 324 -591 bp Feature: domain Description: Rep_trans Location: 615-1224 bp Feature: domain Description: Rep_trans Location: 615-1224 bp Feature: gene Location: 1492-1776 bp Feature: gene Location: 1870-3729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2179-2920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2179-2920 bp Feature: domain Description: HNHc Note: nucleases Location: 3475-3613 bp Feature: domain Description: HNHc Note: nucleases Location: 34 75-3613 bp Feature: gene Location: 3848-4078 bp Feature: gene Location: 4444-5589 bp Feature: domain Description: FtsK Location: 5053-5569 bp Feature: domain Description: FtsK Location: 5053-5569 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), RVT-GII, HNHc (smart00507), FtsK (COG1674)

Seq: JVHJ01000290.1 Enterococcus faecium strain 43_EFCM 1589_5509_130570_712_,469+, whole genome shotgun sequence (5509 bp)
Overview 1 RT 1: 115-5137 bp Neighborhood of RT #1 [115, 5151] RVT-GII AAA_10 ArdA Feature: gene Location: 115-1899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 373-1072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 373-1072 bp Feature: gene Location: 2638-4242 bp Feature: domain Description: AAA_10 Location: 4021-4207 bp Feature: domain Description: AAA_10 Location: 4021-4207 bp Feature: gene Location: 4654-5151 bp Feature: domain Description: ArdA Location: 4672-5137 bp Feature: domain Description: ArdA Location: 4672-5 137 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, AAA_10 (pfam12846), ArdA (pfam07275)

Seq: JVHJ01000087.1 Enterococcus faecium strain 43_EFCM 601_26293_343645, whole genome shotgun sequence (26293 bp)
Overview 1 RT 1: 5360-12191 bp Neighborhood of RT #1 [5360, 12199] PRK13354 CE4_DAC_u3_5s RVT-GII GIIM AcrR CcmA Feature: gene Location: 5360-6616 bp Feature: domain Description: PRK13354 Location: 5363-6608 bp Feature: domain Description: PRK13354 Location: 536 3-6 6 08 bp Feature: gene Location: 7172-8497 bp Feature: domain Description: CE4_DAC_u3_5s Location: 7865-8258 bp Feature: domain Description: CE4_DAC_u3_5s Location: 786 5-8258 bp Feature: gene Location: 8590-9978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8911-9526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8911-9526 bp Feature: domain Description: GIIM Note: maturase Location: 9583-9799 bp Feature: domain Description: GIIM Note: maturase Location: 9583-9799 bp Feature: gene Location: 10465-11064 bp Feature: domain Description: AcrR Location: 10483-10969 bp Feature: domain Description: AcrR Location: 10483-1096 9 bp Feature: gene Location: 11318-12199 bp Feature: domain Description: CcmA Location: 11321-12191 bp Feature: domain Description: CcmA Location: 11321-12191 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13354 (tyrosyl-tRNA synthetase; Provisional), CE4_DAC_u3_5s (cd10972), RVT-GII, GIIM (pfam08388), AcrR (COG1309), CcmA (COG4133)