myRT

myRT report for GCA_001056925.1_ASM105692v1

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Seq: JVFZ01000025.1 Enterococcus faecium strain 465_EFCM 1112_18365_1279560_39+,...,997_, whole genome shotgun sequence (18365 bp)
Overview 1 RT 1: 8055-12452 bp Neighborhood of RT #1 [8055, 13144] MazE RVT-GII HNHc VirB4 Feature: gene Location: 8055-8318 bp Feature: domain Description: MazE Location: 8076-8313 bp Feature: domain Description: MazE Location: 8076-831 3 bp Feature: gene Location: 8377-8697 bp Feature: gene Location: 8885-10762 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9200-9938 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9200-9938 bp Feature: domain Description: HNHc Note: nucleases Location: 10496-10649 bp Feature: domain Description: HNHc Note: nucleases Location: 1 0496-1 0649 bp Feature: gene Location: 10949-11182 bp Feature: gene Location: 11450-13144 bp Feature: domain Description: VirB4 Location: 11768-12452 bp Feature: domain Description: VirB4 Location: 1 1 768-1 2452 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MazE (COG2336), RVT-GII, HNHc (smart00507), VirB4 (COG3451)

Seq: JVFZ01000115.1 Enterococcus faecium strain 465_EFCM 1209_3724_182769_619+,807+,681_, whole genome shotgun sequence (3724 bp)
Overview 1 RT 1: 92-3703 bp Neighborhood of RT #1 [92, 3723] HsdM RVT-AbiP2 Tra8 Feature: gene Location: 92-1570 bp Feature: domain Description: HsdM Location: 113-1538 bp Feature: domain Description: HsdM Location: 113-1538 bp Feature: gene Location: 1908-3383 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2256-2721 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2 2 56-2 72 1 bp Feature: gene Location: 3361-3723 bp Feature: domain Description: Tra8 Location: 3370-3703 bp Feature: domain Description: Tra8 Location: 3370-3703 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), RVT-AbiP2, Tra8 (COG2826)

Seq: JVFZ01000152.1 Enterococcus faecium strain 465_EFCM 1248_30250_715196_915+,...,102+, whole genome shotgun sequence (30250 bp)
Overview 1 RT 1: 17736-23089 bp Neighborhood of RT #1 [17736, 23103] HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA Feature: gene Location: 17736-18026 bp Feature: gene Location: 18285-19469 bp Feature: domain Description: HTH_XRE Location: 18315-18459 bp Feature: domain Description: HTH_XRE Location: 183 15-18459 bp Feature: domain Description: Rol_Rep_N Location: 18492-18756 bp Feature: domain Description: Rol_Rep_N Location: 18492-18756 bp Feature: domain Description: Rep_trans Location: 18780-19392 bp Feature: domain Description: Rep_trans Location: 18780-193 92 bp Feature: gene Location: 20349-22259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20682-21420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20682-21420 bp Feature: domain Description: HNHc Note: nucleases Location: 21975-22140 bp Feature: domain Description: HNHc Note: nucleases Location: 21975-22140 bp Feature: gene Location: 22447-22587 bp Feature: gene Location: 22600-23103 bp Feature: domain Description: ArdA Location: 22618-23089 bp Feature: domain Description: ArdA Location: 22618-23 089 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), RVT-GII, HNHc (smart00507), ArdA (pfam07275)