myRT

myRT report for GCA_001056975.1_ASM105697v1

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Seq: JVFI01000297.1 Escherichia coli strain 483_ECOL 1232_3034_176804_548_,...,112+, whole genome shotgun sequence (3034 bp)
Overview 1 RT 1: 1-2697 bp Neighborhood of RT #1 [1, 2942] InsE PHA02517 RVT-GII GIIM Feature: gene Location: 1-348 bp Feature: domain Description: InsE Location: 25-346 bp Feature: domain Description: InsE Location: 25-346 bp Feature: gene Location: 348-827 bp Feature: domain Description: PHA02517 Location: 408-762 bp Feature: domain Description: PHA0251 7 Location: 408-762 bp Feature: gene Location: 1419-2942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1692-2424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 692-2424 bp Feature: domain Description: GIIM Note: maturase Location: 2499-2697 bp Feature: domain Description: GIIM Note: maturase Location: 2499-2697 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: JVFI01000097.1 Escherichia coli strain 483_ECOL 450_83075_1128645, whole genome shotgun sequence (83075 bp)
Overview 1 RT 1: 44371-48312 bp Neighborhood of RT #1 [44371, 48312] RVT-Retrons Feature: gene Location: 44371-44610 bp Feature: gene Location: 44917-45093 bp Feature: gene Location: 45166-46938 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45325-45943 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4532 5-45943 bp Feature: gene Location: 46960-47127 bp Feature: gene Location: 47173-48312 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: JVFI01000141.1 Escherichia coli strain 483_ECOL 647_11143_165203, whole genome shotgun sequence (11143 bp)
Overview 1 RT 1: 6504-9286 bp Neighborhood of RT #1 [6504, 10635] GerD RVT-UG1 Feature: gene Location: 6504-6938 bp Feature: domain Description: GerD Location: 6582-6696 bp Feature: domain Description: GerD Location: 6582-6696 bp Feature: gene Location: 6947-8062 bp Feature: gene Location: 8164-10635 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 8776-9286 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 8776-9286 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GerD (pfam17898), RVT-UG1