myRT

myRT report for GCA_001057175.1_ASM105717v1

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Seq: JVCQ01000010.1 Burkholderia cenocepacia strain 548_BMUL 1234_6855_242158_77_,102+,830+, whole genome shotgun sequence (6855 bp)
Overview 1 RT 1: 3323-6550 bp Neighborhood of RT #1 [3323, 6735] PRK09121 RutF RVT-GII GIIM Feature: gene Location: 3323-4351 bp Feature: domain Description: PRK09121 Location: 3335-4346 bp Feature: domain Description: PRK091 21 Location: 3335-4346 bp Feature: gene Location: 4453-5001 bp Feature: domain Description: RutF Location: 4519-4981 bp Feature: domain Description: RutF Location: 451 9-4981 bp Feature: gene Location: 5338-6735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5671-6289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5671 -6289 bp Feature: domain Description: GIIM Note: maturase Location: 6340-6550 bp Feature: domain Description: GIIM Note: maturase Location: 6340-6550 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09121 (methionine synthase), RutF (TIGR03615), RVT-GII, GIIM (pfam08388)

Seq: JVCQ01000069.1 Burkholderia cenocepacia strain 548_BMUL 1295_136586_2469123_559+,...,623_, whole genome shotgun sequence (136586 bp)
Overview 1 RT 1: 25944-31467 bp Neighborhood of RT #1 [25944, 31472] MFS_MucK Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 25944-27179 bp Feature: domain Description: MFS_MucK Location: 26022-27156 bp Feature: domain Description: MFS_MucK Location: 2 602 2 -2 7156 bp Feature: gene Location: 27490-27819 bp Feature: domain Description: Histone_HNS Location: 27511-27748 bp Feature: domain Description: Histone_HNS Location: 2 7511-2 7748 bp Feature: gene Location: 28145-29605 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 28721-29357 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 872 1-2 9357 bp Feature: gene Location: 29748-30236 bp Feature: domain Description: FIN Location: 29844-30201 bp Feature: domain Description: FIN Location: 2 9844-302 01 bp Feature: gene Location: 30555-31472 bp Feature: domain Description: his_ut_repres Location: 30795-31467 bp Feature: domain Description: his_ut_repres Location: 30795-31467 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_MucK (cd17371), Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: JVCQ01000100.1 Burkholderia cenocepacia strain 548_BMUL 1328_7297_191915_790+,301+, whole genome shotgun sequence (7297 bp)
Overview 1 RT 1: 300-4976 bp Neighborhood of RT #1 [300, 4990] COG3547 RVT-GII GIIM GDP_MD_SDR_e Gmd Feature: gene Location: 300-1334 bp Feature: domain Description: COG3547 Location: 315-1278 bp Feature: domain Description: COG3 547 Location: 3 15-1278 bp Feature: gene Location: 1583-2872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1838-2453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 183 8-2453 bp Feature: domain Description: GIIM Note: maturase Location: 2513-2714 bp Feature: domain Description: GIIM Note: maturase Location: 2513 -2714 bp Feature: gene Location: 2992-3882 bp Feature: domain Description: GDP_MD_SDR_e Location: 2995-3850 bp Feature: domain Description: GDP_MD_SDR_e Location: 2995-3 850 bp Feature: gene Location: 3944-4990 bp Feature: domain Description: Gmd Location: 3959-4976 bp Feature: domain Description: Gmd Location: 3 959-4976 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), GDP_MD_SDR_e (cd05260), COG3547 (Transposase )

Seq: JVCQ01000106.1 Burkholderia cenocepacia strain 548_BMUL 1334_2958_138174_830+,790_, whole genome shotgun sequence (2958 bp)
Overview 1 RT 1: 63-2603 bp Neighborhood of RT #1 [63, 2659] RVT-GII GIIM COG3547 Feature: gene Location: 63-1460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 396-1014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 396-1014 bp Feature: domain Description: GIIM Note: maturase Location: 1065-1275 bp Feature: domain Description: GIIM Note: maturase Location: 1065-1275 bp Feature: gene Location: 1625-2659 bp Feature: domain Description: COG3547 Location: 1640-2603 bp Feature: domain Description: COG354 7 Location: 164 0-2603 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: JVCQ01000107.1 Burkholderia cenocepacia strain 548_BMUL 1335_18176_305801_830_,...,391_, whole genome shotgun sequence (18176 bp)
Overview 1 RT 1: 193-2694 bp Neighborhood of RT #1 [193, 2694] RVT-GII GIIM DHFR_1 Feature: gene Location: 193-1518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 454-1072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45 4-1072 bp Feature: domain Description: GIIM Note: maturase Location: 1123-1333 bp Feature: domain Description: GIIM Note: maturase Location: 1123-1333 bp Feature: gene Location: 1604-2104 bp Feature: domain Description: DHFR_1 Location: 1616-2093 bp Feature: domain Description: DHFR_1 Location: 1616-2093 bp Feature: gene Location: 2395-2694 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DHFR_1 (pfam00186), RVT-GII, GIIM (pfam08388)