myRT

myRT report for GCA_001057995.1_ASM105799v1

Download annotations/find similar RTs

Seq: JUWS01000024.1 Escherichia coli strain 696_ECOL 108_1329_77610, whole genome shotgun sequence (1329 bp)
Overview 1 RT 1: 3-1263 bp Neighborhood of RT #1 [3, 1328] RVT-GII PHA02517 Feature: gene Location: 3-329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-330 bp Feature: gene Location: 921-1328 bp Feature: domain Description: PHA02517 Location: 924-1263 bp Feature: domain Description: PHA0251 7 Location: 924-1 263 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PHA02517 (putative transposase OrfB; Reviewed)

Seq: JUWS01000070.1 Escherichia coli strain 696_ECOL 250_1411_34199, whole genome shotgun sequence (1411 bp)
Overview 1 RT 1: 163-1165 bp Neighborhood of RT #1 [163, 1410] RVT-GII GIIM Feature: gene Location: 163-1410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 166-892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 166-892 bp Feature: domain Description: GIIM Note: maturase Location: 967-1165 bp Feature: domain Description: GIIM Note: maturase Location: 967-1165 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JUWS01000078.1 Escherichia coli strain 696_ECOL 272_45901_661936, whole genome shotgun sequence (45901 bp)
Overview 1 RT 1: 43043-45223 bp Neighborhood of RT #1 [43043, 45876] HTH_29 HTH_33 DDE_3 RVT-AbiP2 Feature: gene Location: 43043-43333 bp Feature: gene Location: 43343-44404 bp Feature: domain Description: HTH_29 Location: 43463-43634 bp Feature: domain Description: HTH_29 Location: 43 463 -43 63 4 bp Feature: domain Description: HTH_33 Location: 43667-43829 bp Feature: domain Description: HTH_3 3 Location: 43 667-43 829 bp Feature: domain Description: DDE_3 Location: 43871-44300 bp Feature: domain Description: DDE_3 Location: 43 871-443 00 bp Feature: gene Location: 44506-45876 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 44767-45223 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 44767-45223 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358), RVT-AbiP2