myRT

myRT report for GCA_001058125.1_ASM105812v1

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Seq: JUVY01000079.1 Enterococcus faecium strain 715_EFCM 271_32291_585221, whole genome shotgun sequence (32291 bp)
Overview 1 RT 1: 14462-19502 bp Neighborhood of RT #1 [14462, 19516] HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA Feature: gene Location: 14462-14605 bp Feature: gene Location: 14698-15882 bp Feature: domain Description: HTH_XRE Location: 14728-14872 bp Feature: domain Description: HTH_XRE Location: 1 4728-1 4872 bp Feature: domain Description: Rol_Rep_N Location: 14905-15169 bp Feature: domain Description: Rol_Rep_N Location: 1 4905-1 51 69 bp Feature: domain Description: Rep_trans Location: 15193-15805 bp Feature: domain Description: Rep_trans Location: 1 51 93-1 5805 bp Feature: gene Location: 16762-18672 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17095-17833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 7095-1 7833 bp Feature: domain Description: HNHc Note: nucleases Location: 18388-18553 bp Feature: domain Description: HNHc Note: nucleases Location: 1 8388-1 8553 bp Feature: gene Location: 18860-19000 bp Feature: gene Location: 19013-19516 bp Feature: domain Description: ArdA Location: 19031-19502 bp Feature: domain Description: ArdA Location: 1 9031 -1 9502 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), RVT-GII, HNHc (smart00507), ArdA (pfam07275)

Seq: JUVY01000166.1 Enterococcus faecium strain 715_EFCM 552_9964_523060, whole genome shotgun sequence (9964 bp)
Overview 1 RT 1: 3-4051 bp Neighborhood of RT #1 [3, 4743] RVT-GII HNHc VirB4 Feature: gene Location: 3-296 bp Feature: gene Location: 484-2361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 799-1537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 799-1537 bp Feature: domain Description: HNHc Note: nucleases Location: 2095-2248 bp Feature: domain Description: HNHc Note: nucleases Location: 2 095-2 2 48 bp Feature: gene Location: 2548-2781 bp Feature: gene Location: 3049-4743 bp Feature: domain Description: VirB4 Location: 3367-4051 bp Feature: domain Description: VirB4 Location: 3367-4051 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), VirB4 (COG3451)

Seq: JUVY01000241.1 Enterococcus faecium strain 715_EFCM 779_3345_112479, whole genome shotgun sequence (3345 bp)
Overview 1 RT 1: 29-2658 bp Neighborhood of RT #1 [29, 3320] HsdM RVT-AbiP2 Feature: gene Location: 29-1507 bp Feature: domain Description: HsdM Location: 50-1475 bp Feature: domain Description: HsdM Location: 50-1475 bp Feature: gene Location: 1845-3320 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2193-2658 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2193 -2658 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), RVT-AbiP2