myRT

myRT report for GCA_001058635.1_ASM105863v1

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Seq: JUQK01000547.1 Enterococcus faecium strain 856_EFCM 1326_30935_584177, whole genome shotgun sequence (30935 bp)
Overview 1 RT 1: 18553-24406 bp Neighborhood of RT #1 [18553, 24525] VirB4 RVT-GII HNHc Glucosaminidase Peptidase_M23 Feature: gene Location: 18553-20247 bp Feature: domain Description: VirB4 Location: 18871-19555 bp Feature: domain Description: VirB4 Location: 1 8871 -1 9555 bp Feature: gene Location: 20515-20748 bp Feature: gene Location: 20935-22812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21250-21988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 250-21 988 bp Feature: domain Description: HNHc Note: nucleases Location: 22546-22699 bp Feature: domain Description: HNHc Note: nucleases Location: 22546-22699 bp Feature: gene Location: 23000-23320 bp Feature: gene Location: 23320-24525 bp Feature: domain Description: Glucosaminidase Location: 23596-23992 bp Feature: domain Description: Glucosaminidase Location: 23596-23992 bp Feature: domain Description: Peptidase_M23 Location: 24169-24406 bp Feature: domain Description: Peptidase_M23 Location: 241 69-24406 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, HNHc (smart00507), Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551)

Seq: JUQK01000871.1 Enterococcus faecium strain 856_EFCM 2069_20347_254807, whole genome shotgun sequence (20347 bp)
Overview 1 RT 1: 7024-11765 bp Neighborhood of RT #1 [7024, 11842] ArdA RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans Feature: gene Location: 7024-7527 bp Feature: domain Description: ArdA Location: 7042-7513 bp Feature: domain Description: ArdA Location: 7042 -7513 bp Feature: gene Location: 7529-7738 bp Feature: gene Location: 7868-9778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8201-8939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82 01-8939 bp Feature: domain Description: HNHc Note: nucleases Location: 9494-9659 bp Feature: domain Description: HNHc Note: nucleases Location: 9494-9659 bp Feature: gene Location: 10287-10436 bp Feature: gene Location: 10658-11842 bp Feature: domain Description: HTH_XRE Location: 10688-10832 bp Feature: domain Description: HTH_XRE Location: 10688-10832 bp Feature: domain Description: Rol_Rep_N Location: 10865-11129 bp Feature: domain Description: Rol_Rep_N Location: 10865-1112 9 bp Feature: domain Description: Rep_trans Location: 11153-11765 bp Feature: domain Description: Rep_trans Location: 11153-11765 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdA (pfam07275), RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486)

Seq: JUQK01001650.1 Enterococcus faecium strain 856_EFCM 3906_3279_67069, whole genome shotgun sequence (3279 bp)
Overview 1 RT 1: 2-3252 bp Neighborhood of RT #1 [2, 3278] RVT-AbiP2 HsdM Feature: gene Location: 2-1468 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 341-806 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 3 41-806 bp Feature: gene Location: 1806-3278 bp Feature: domain Description: HsdM Location: 1827-3252 bp Feature: domain Description: HsdM Location: 1827-3 252 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2, HsdM (COG0286)