myRT

myRT report for GCA_001058775.1_ASM105877v1

Download annotations/find similar RTs

Seq: JUOZ01000012.1 Bacteroides fragilis strain 894_BFRA 41_29544_433149, whole genome shotgun sequence (29544 bp)
Overview 1 RT 1: 19118-28077 bp Neighborhood of RT #1 [19118, 28085] GlnA3 RVT-Retrons rpsA RNase_Z Feature: gene Location: 19118-21307 bp Feature: domain Description: GlnA3 Location: 19193-21305 bp Feature: domain Description: GlnA3 Location: 1 91 93-21 305 bp Feature: gene Location: 21547-23766 bp Feature: gene Location: 23973-25085 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 24288-24837 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 24288-24837 bp Feature: gene Location: 25227-27020 bp Feature: domain Description: rpsA Location: 25305-26913 bp Feature: domain Description: rpsA Location: 25305-2691 3 bp Feature: gene Location: 27171-28085 bp Feature: domain Description: RNase_Z Location: 27186-28077 bp Feature: domain Description: RNase_Z Location: 271 86-28077 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)

Seq: JUOZ01000178.1 Bacteroides fragilis strain 894_BFRA 562_19706_233970, whole genome shotgun sequence (19706 bp)
Overview 1 RT 1: 3749-9240 bp Neighborhood of RT #1 [3749, 9240] Cas_Cmr5 Cmr6_III-B RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Feature: gene Location: 3749-4159 bp Feature: domain Description: Cas_Cmr5 Location: 3797-4043 bp Feature: domain Description: Cas_Cmr5 Location: 3797-4043 bp Feature: gene Location: 4156-5106 bp Feature: domain Description: Cmr6_III-B Location: 4318-5095 bp Feature: domain Description: Cmr6_III-B Location: 4318-5095 bp Feature: gene Location: 5126-7396 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5333-5939 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5333-5939 bp Feature: domain Description: Cas1_I-II-III Location: 6398-7355 bp Feature: domain Description: Cas1_I-II-III Location: 6398-7355 bp Feature: gene Location: 7390-7680 bp Feature: domain Description: Cas2_I_II_III Location: 7417-7627 bp Feature: domain Description: Cas2 _I_II_III Location: 7417-762 7 bp Feature: gene Location: 8851-9240 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas_Cmr5 (pfam09701), Cmr6_III-B (cd09661), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442)

Seq: JUOZ01000193.1 Bacteroides fragilis strain 894_BFRA 612_22421_423430, whole genome shotgun sequence (22421 bp)
Overview 1 RT 1: 10080-13589 bp Neighborhood of RT #1 [10080, 13589] DUF4133 DUF4134 RVT-GII Intron_maturas2 HNHc DUF4134 Feature: gene Location: 10080-10376 bp Feature: domain Description: DUF4133 Location: 10122-10299 bp Feature: domain Description: DUF413 3 Location: 10122-10299 bp Feature: gene Location: 10389-10583 bp Feature: domain Description: DUF4134 Location: 10479-10569 bp Feature: domain Description: DUF413 4 Location: 10479-10569 bp Feature: gene Location: 10608-12419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10872-11694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10872-11694 bp Feature: domain Description: Intron_maturas2 Location: 11883-12093 bp Feature: domain Description: Intron_maturas2 Location: 11883 -12093 bp Feature: domain Description: HNHc Note: nucleases Location: 12243-12348 bp Feature: domain Description: HNHc Note: nucleases Location: 12243 -123 48 bp Feature: gene Location: 12961-13239 bp Feature: domain Description: DUF4134 Location: 13021-13222 bp Feature: domain Description: DUF413 4 Location: 13 021-13 222 bp Feature: gene Location: 13263-13589 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JUOZ01000202.1 Bacteroides fragilis strain 894_BFRA 642_51965_902767, whole genome shotgun sequence (51965 bp)
Overview 1 RT 1: 3-10154 bp 2 RT 2: 27745-33018 bp Neighborhood of RT #1 [3, 10231] COG4646 COG4646 matK RVT-GII Intron_maturas2 COG4646 HepA RVT_N RVT-GII GIIM mpi Neighborhood of RT #2 [27745, 33044] Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Feature: gene Location: 3-1769 bp Feature: domain Description: COG4646 Location: 606-741 bp Feature: domain Description: COG4 64 6 Location: 606-74 1 bp Feature: domain Description: COG4646 Location: 891-1758 bp Feature: domain Description: COG4 64 6 Location: 891-1758 bp Feature: gene Location: 2321-4123 bp Feature: domain Description: matK Location: 2390-2549 bp Feature: domain Description: matK Location: 2390-254 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2585-3407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2585-34 07 bp Feature: domain Description: Intron_maturas2 Location: 3566-3791 bp Feature: domain Description: Intron_maturas2 Location: 3566-3791 bp Feature: gene Location: 4086-5744 bp Feature: domain Description: COG4646 Location: 4221-5364 bp Feature: domain Description: COG4 64 6 Location: 4 221-5364 bp Feature: domain Description: HepA Location: 5592-5727 bp Feature: domain Description: HepA Location: 5592-5727 bp Feature: gene Location: 6401-8068 bp Feature: domain Description: RVT_N Location: 6455-6698 bp Feature: domain Description: RVT_N Location: 64 55-6698 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6743-7391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 674 3-7391 bp Feature: domain Description: GIIM Note: maturase Location: 7445-7676 bp Feature: domain Description: GIIM Note: maturase Location: 74 4 5-7676 bp Feature: gene Location: 8022-9359 bp Feature: gene Location: 9476-10231 bp Feature: domain Description: mpi Location: 9578-10154 bp Feature: domain Description: mpi Location: 9578-10154 bp Feature: gene Location: 27745-29775 bp Feature: domain Description: Bac_Flav_CT_G Location: 27748-29770 bp Feature: domain Description: Bac_Flav_CT_G Location: 2774 8-29770 bp Feature: gene Location: 29968-30174 bp Feature: gene Location: 30354-32054 bp Feature: domain Description: RVT_N Location: 30453-30696 bp Feature: domain Description: RVT_N Location: 304 53-30696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30741-31389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3074 1-31389 bp Feature: domain Description: GIIM Note: maturase Location: 31440-31674 bp Feature: domain Description: GIIM Note: maturase Location: 314 4 0-31674 bp Feature: gene Location: 32057-32647 bp Feature: domain Description: Bac_Flav_CT_G Location: 32171-32630 bp Feature: domain Description: Bac_Flav_CT_G Location: 32171-32630 bp Feature: gene Location: 32670-33044 bp Feature: domain Description: DUF3876 Location: 32748-33018 bp Feature: domain Description: DUF3876 Location: 3274 8-33018 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4646 (Adenine-specific DNA methylase, N12 class ), matK (CHL00002), RVT-GII, Intron_maturas2 (pfam01348), HepA (COG0553), RVT_N (pfam13655), GIIM (pfam08388), mpi (PRK13413), Bac_Flav_CT_G (TIGR03783), DUF3876 (pfam12992)