myRT

myRT report for GCA_001060065.1_ASM106006v1

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Seq: JUKJ01000226.1 Enterococcus faecium strain 999_EFCM 770_32291_493279, whole genome shotgun sequence (32291 bp)
Overview 1 RT 1: 12776-17830 bp Neighborhood of RT #1 [12776, 17830] ArdA RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans Feature: gene Location: 12776-13279 bp Feature: domain Description: ArdA Location: 12794-13265 bp Feature: domain Description: ArdA Location: 1 2794-1 3265 bp Feature: gene Location: 13281-13490 bp Feature: gene Location: 13620-15530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13953-14691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3953-1 4691 bp Feature: domain Description: HNHc Note: nucleases Location: 15246-15411 bp Feature: domain Description: HNHc Note: nucleases Location: 1 5246-1 541 1 bp Feature: gene Location: 16410-17594 bp Feature: domain Description: HTH_XRE Location: 16440-16584 bp Feature: domain Description: HTH_XRE Location: 1 6440-1 6584 bp Feature: domain Description: Rol_Rep_N Location: 16617-16881 bp Feature: domain Description: Rol_Rep_N Location: 1 661 7-1 6881 bp Feature: domain Description: Rep_trans Location: 16905-17517 bp Feature: domain Description: Rep_trans Location: 1 6905-1 751 7 bp Feature: gene Location: 17687-17830 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdA (pfam07275), RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486)

Seq: JUKJ01000236.1 Enterococcus faecium strain 999_EFCM 803_3345_121771, whole genome shotgun sequence (3345 bp)
Overview 1 RT 1: 29-2658 bp Neighborhood of RT #1 [29, 3320] HsdM RVT-AbiP2 Feature: gene Location: 29-1507 bp Feature: domain Description: HsdM Location: 50-1475 bp Feature: domain Description: HsdM Location: 50-1475 bp Feature: gene Location: 1845-3320 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2193-2658 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2 193-2 658 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), RVT-AbiP2

Seq: JUKJ01000285.1 Enterococcus faecium strain 999_EFCM 991_9964_443972, whole genome shotgun sequence (9964 bp)
Overview 1 RT 1: 5222-9962 bp Neighborhood of RT #1 [5222, 9962] VirB4 RVT-GII HNHc Feature: gene Location: 5222-6916 bp Feature: domain Description: VirB4 Location: 5540-6224 bp Feature: domain Description: VirB4 Location: 5540-6224 bp Feature: gene Location: 7184-7417 bp Feature: gene Location: 7604-9481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7919-8657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7919-8657 bp Feature: domain Description: HNHc Note: nucleases Location: 9215-9368 bp Feature: domain Description: HNHc Note: nucleases Location: 9215-93 68 bp Feature: gene Location: 9669-9962 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, HNHc (smart00507)