myRT

myRT report for GCA_001060395.1_ASM106039v1

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Seq: JWBF01000337.1 Pseudomonas denitrificans (nomen rejiciendum) strain 1151_PDEN 1131_95629_1485274, whole genome shotgun sequence (95629 bp)
Overview 1 RT 1: 27847-38144 bp Neighborhood of RT #1 [27847, 38155] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 27847-29700 bp Feature: domain Description: PRK05658 Location: 27859-29698 bp Feature: domain Description: PRK05658 Location: 27859-29698 bp Feature: gene Location: 29807-33544 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 29915-30572 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 2991 5-30572 bp Feature: domain Description: PRK09776 Location: 30785-31256 bp Feature: domain Description: PRK09776 Location: 30785-31 256 bp Feature: domain Description: PAS Location: 31313-31838 bp Feature: domain Description: PAS Location: 31 31 3-31 838 bp Feature: domain Description: PRK10060 Location: 31847-33494 bp Feature: domain Description: PRK1 0060 Location: 31 847-33494 bp Feature: gene Location: 34625-36310 bp Feature: domain Description: RVT_N Location: 34682-34922 bp Feature: domain Description: RVT_N Location: 34682-34922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34970-35606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34970-35606 bp Feature: domain Description: GIIM Note: maturase Location: 35660-35891 bp Feature: domain Description: GIIM Note: maturase Location: 35660-35891 bp Feature: domain Description: HNH Note: nucleases Location: 36143-36281 bp Feature: domain Description: HNH Note: nucleases Location: 361 43-36281 bp Feature: gene Location: 36638-36775 bp Feature: gene Location: 37034-38155 bp Feature: domain Description: COG3177 Location: 37052-38144 bp Feature: domain Description: COG31 77 Location: 37052-381 44 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3177 (Fic family protein )

Seq: JWBF01000424.1 Pseudomonas denitrificans (nomen rejiciendum) strain 1151_PDEN 1408_45425_730010, whole genome shotgun sequence (45425 bp)
Overview 1 RT 1: 1-2943 bp Neighborhood of RT #1 [1, 2943] RVT-GII GIIM Feature: gene Location: 1-228 bp Feature: gene Location: 764-2032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 977-1634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 977-1634 bp Feature: domain Description: GIIM Note: maturase Location: 1712-1934 bp Feature: domain Description: GIIM Note: maturase Location: 1712 -1934 bp Feature: gene Location: 2182-2580 bp Feature: gene Location: 2764-2943 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JWBF01000236.1 Pseudomonas denitrificans (nomen rejiciendum) strain 1151_PDEN 766_28692_442604, whole genome shotgun sequence (28692 bp)
Overview 1 RT 1: 19626-26914 bp Neighborhood of RT #1 [19626, 26976] HxlR PRK06333 RVT-UG2 YHI9 STN TonB-siderophor Feature: gene Location: 19626-20132 bp Feature: domain Description: HxlR Location: 19650-19968 bp Feature: domain Description: HxlR Location: 19650-19968 bp Feature: gene Location: 20241-21509 bp Feature: domain Description: PRK06333 Location: 20247-21504 bp Feature: domain Description: PRK063 3 3 Location: 20247-21504 bp Feature: gene Location: 22008-23354 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 22257-23043 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 22257-23 043 bp Feature: gene Location: 23538-24374 bp Feature: domain Description: YHI9 Location: 23550-24366 bp Feature: domain Description: YHI9 Location: 23 550-243 66 bp Feature: gene Location: 24535-26976 bp Feature: domain Description: STN Location: 24694-24847 bp Feature: domain Description: STN Location: 24694-24847 bp Feature: domain Description: TonB-siderophor Location: 24955-26914 bp Feature: domain Description: TonB-siderophor Location: 24955-26914 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HxlR (pfam01638), PRK06333 (beta-ketoacyl-ACP synthase), RVT-UG2, YHI9 (COG0384), STN (smart00965), TonB-siderophor (TIGR01783)

Seq: JWBF01000023.1 Pseudomonas denitrificans (nomen rejiciendum) strain 1151_PDEN 97_94623_1587907, whole genome shotgun sequence (94623 bp)
Overview 1 RT 1: 40224-46195 bp Neighborhood of RT #1 [40224, 46200] PRK00024 RVT_N RVT-GII GIIM HNHc PRK05579 dut Feature: gene Location: 40224-40772 bp Feature: gene Location: 40789-41463 bp Feature: domain Description: PRK00024 Location: 40792-41461 bp Feature: domain Description: PRK00024 Location: 4 0792-4 14 61 bp Feature: gene Location: 42635-44317 bp Feature: domain Description: RVT_N Location: 42644-42887 bp Feature: domain Description: RVT_N Location: 4 264 4 -4 2887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42935-43586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 2935-4 3586 bp Feature: domain Description: GIIM Note: maturase Location: 43664-43892 bp Feature: domain Description: GIIM Note: maturase Location: 4 3664 -4 3892 bp Feature: domain Description: HNHc Note: nucleases Location: 44120-44276 bp Feature: domain Description: HNHc Note: nucleases Location: 4 4 120-4 4 276 bp Feature: gene Location: 44529-45737 bp Feature: domain Description: PRK05579 Location: 44535-45729 bp Feature: domain Description: PRK05579 Location: 4 4 535-4 5729 bp Feature: gene Location: 45745-46200 bp Feature: domain Description: dut Location: 45751-46195 bp Feature: domain Description: dut Location: 4 5751-4 6195 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00024 (DNA repair protein RadC), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK05579 (bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated), dut (TIGR00576)