myRT

myRT report for GCA_001060435.1_ASM106043v1

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Seq: JWAL01000260.1 Pseudomonas aeruginosa strain 1170_PAER 596_7830_82225, whole genome shotgun sequence (7830 bp)
Overview 1 RT 1: 3-6463 bp Neighborhood of RT #1 [3, 6627] TonB-siderophor YHI9 RVT-UG2 PRK06333 HxlR Feature: gene Location: 3-1718 bp Feature: domain Description: TonB-siderophor Location: 6-1656 bp Feature: domain Description: TonB-siderophor Location: 6-1 656 bp Feature: gene Location: 1879-2715 bp Feature: domain Description: YHI9 Location: 1891-2707 bp Feature: domain Description: YHI9 Location: 1 891 -2707 bp Feature: gene Location: 2899-4245 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 3148-3934 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 31 48-3934 bp Feature: gene Location: 4744-6012 bp Feature: domain Description: PRK06333 Location: 4750-6007 bp Feature: domain Description: PRK06333 Location: 4750-6007 bp Feature: gene Location: 6121-6627 bp Feature: domain Description: HxlR Location: 6145-6463 bp Feature: domain Description: HxlR Location: 61 45-6463 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TonB-siderophor (TIGR01783), YHI9 (COG0384), RVT-UG2, PRK06333 (beta-ketoacyl-ACP synthase), HxlR (pfam01638)

Seq: JWAL01000281.1 Pseudomonas aeruginosa strain 1170_PAER 643_49767_779431, whole genome shotgun sequence (49767 bp)
Overview 1 RT 1: 40789-46195 bp Neighborhood of RT #1 [40789, 46200] PRK00024 RVT_N RVT-GII GIIM HNHc PRK05579 dut Feature: gene Location: 40789-41463 bp Feature: domain Description: PRK00024 Location: 40792-41461 bp Feature: domain Description: PRK0002 4 Location: 40792 -41461 bp Feature: gene Location: 42281-42409 bp Feature: gene Location: 42584-44317 bp Feature: domain Description: RVT_N Location: 42644-42887 bp Feature: domain Description: RVT_N Location: 42 644-42 887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42935-43586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 935-43586 bp Feature: domain Description: GIIM Note: maturase Location: 43664-43892 bp Feature: domain Description: GIIM Note: maturase Location: 43664-43892 bp Feature: domain Description: HNHc Note: nucleases Location: 44120-44276 bp Feature: domain Description: HNHc Note: nucleases Location: 4412 0-442 76 bp Feature: gene Location: 44529-45737 bp Feature: domain Description: PRK05579 Location: 44535-45729 bp Feature: domain Description: PRK05579 Location: 44535-4572 9 bp Feature: gene Location: 45745-46200 bp Feature: domain Description: dut Location: 45751-46195 bp Feature: domain Description: dut Location: 45751-46195 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00024 (DNA repair protein RadC), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK05579 (bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated), dut (TIGR00576)

Seq: JWAL01000345.1 Pseudomonas aeruginosa strain 1170_PAER 794_26497_362302, whole genome shotgun sequence (26497 bp)
Overview 1 RT 1: 1-2943 bp Neighborhood of RT #1 [1, 2943] RVT-GII GIIM Feature: gene Location: 1-228 bp Feature: gene Location: 764-2032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 977-1634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 977-163 4 bp Feature: domain Description: GIIM Note: maturase Location: 1712-1934 bp Feature: domain Description: GIIM Note: maturase Location: 1712-193 4 bp Feature: gene Location: 2182-2580 bp Feature: gene Location: 2764-2943 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JWAL01000362.1 Pseudomonas aeruginosa strain 1170_PAER 835_89521_1282980, whole genome shotgun sequence (89521 bp)
Overview 1 RT 1: 53122-63428 bp Neighborhood of RT #1 [53122, 63430] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 53122-54243 bp Feature: domain Description: COG3177 Location: 53140-54232 bp Feature: domain Description: COG3177 Location: 5314 0-54 232 bp Feature: gene Location: 54502-54639 bp Feature: gene Location: 54967-56652 bp Feature: domain Description: RVT_N Location: 55024-55264 bp Feature: domain Description: RVT_N Location: 55024 -55264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55312-55948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55312-5594 8 bp Feature: domain Description: GIIM Note: maturase Location: 56002-56233 bp Feature: domain Description: GIIM Note: maturase Location: 56002-56233 bp Feature: domain Description: HNH Note: nucleases Location: 56485-56623 bp Feature: domain Description: HNH Note: nucleases Location: 564 85-56623 bp Feature: gene Location: 57733-61470 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 57841-58498 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 5784 1-584 98 bp Feature: domain Description: PRK09776 Location: 58711-59182 bp Feature: domain Description: PRK09776 Location: 58711-59182 bp Feature: domain Description: PAS Location: 59239-59764 bp Feature: domain Description: PAS Location: 59239-59764 bp Feature: domain Description: PRK10060 Location: 59773-61420 bp Feature: domain Description: PRK10060 Location: 59773-614 20 bp Feature: gene Location: 61577-63430 bp Feature: domain Description: PRK05658 Location: 61589-63428 bp Feature: domain Description: PRK05658 Location: 61589-634 28 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)