myRT

myRT report for GCA_001060735.1_ASM106073v1

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Seq: JVWG01000131.1 Pseudomonas aeruginosa strain 1268_PAER 876_145272_2162689_152+,...,396_, whole genome shotgun sequence (145346 bp)
Overview 1 RT 1: 73337-83304 bp Neighborhood of RT #1 [73337, 83354] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH RMtype1_S_SonII-TRD2-CR2_like Feature: gene Location: 73337-75190 bp Feature: domain Description: PRK05658 Location: 73349-75188 bp Feature: domain Description: PRK05658 Location: 73349-751 88 bp Feature: gene Location: 75297-79034 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 75405-76062 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 75405-76062 bp Feature: domain Description: PRK09776 Location: 76275-76746 bp Feature: domain Description: PRK09776 Location: 76275-76746 bp Feature: domain Description: PAS Location: 76818-77328 bp Feature: domain Description: PAS Location: 7681 8-77328 bp Feature: domain Description: PRK10060 Location: 77337-78984 bp Feature: domain Description: PRK1 0060 Location: 77337-78984 bp Feature: gene Location: 80115-81800 bp Feature: RT Description: RVT_N Location: 80172-80412 bp Feature: RT Description: RVT_N Location: 801 72-8041 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80460-81096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80460-81 096 bp Feature: domain Description: GIIM Note: maturase Location: 81150-81381 bp Feature: domain Description: GIIM Note: maturase Location: 81 1 50-81 381 bp Feature: domain Description: HNH Note: nucleases Location: 81633-81771 bp Feature: domain Description: HNH Note: nucleases Location: 81 633-81 771 bp Feature: gene Location: 82155-82565 bp Feature: gene Location: 82854-83354 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 82956-83304 bp Feature: domain Description: RMtype1 _S_SonII-TRD2-CR2_like Location: 82956-83304 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), RMtype1_S_SonII-TRD2-CR2_like (cd17246)