myRT

myRT report for GCA_001060745.1_ASM106074v1

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Seq: JVWF01000176.1 Pseudomonas denitrificans (nomen rejiciendum) strain 1269_PDEN 885_145428_2078068_156_,...,664_, whole genome shotgun sequence (145428 bp)
Overview 1 RT 1: 73419-83386 bp Neighborhood of RT #1 [73419, 83436] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH RMtype1_S_SonII-TRD2-CR2_like Feature: gene Location: 73419-75272 bp Feature: domain Description: PRK05658 Location: 73431-75270 bp Feature: domain Description: PRK05658 Location: 73431 -75270 bp Feature: gene Location: 75379-79116 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 75487-76144 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 75487-761 44 bp Feature: domain Description: PRK09776 Location: 76357-76828 bp Feature: domain Description: PRK09776 Location: 76357-76828 bp Feature: domain Description: PAS Location: 76900-77410 bp Feature: domain Description: PAS Location: 76900-7741 0 bp Feature: domain Description: PRK10060 Location: 77419-79066 bp Feature: domain Description: PRK1 0060 Location: 7741 9-79066 bp Feature: gene Location: 80197-81882 bp Feature: RT Description: RVT_N Location: 80254-80494 bp Feature: RT Description: RVT_N Location: 80254-80494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80542-81178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80542-81 1 78 bp Feature: domain Description: GIIM Note: maturase Location: 81232-81463 bp Feature: domain Description: GIIM Note: maturase Location: 81 232-81 463 bp Feature: domain Description: HNH Note: nucleases Location: 81715-81853 bp Feature: domain Description: HNH Note: nucleases Location: 81 71 5-81 853 bp Feature: gene Location: 82237-82647 bp Feature: gene Location: 82936-83436 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 83038-83386 bp Feature: domain Description: RMtype1 _S_SonII-TRD2-CR2_like Location: 83038-83386 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), RMtype1_S_SonII-TRD2-CR2_like (cd17246)