myRT

myRT report for GCA_001061055.1_ASM106105v1

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Seq: JWBZ01000081.1 Hafnia paralvei strain 1133_RAQU 380_29749_363525, whole genome shotgun sequence (29749 bp)
Overview 1 RT 1: 18783-24047 bp Neighborhood of RT #1 [18783, 24904] TIGR02646 COG3950 RVT-Retrons Phage_GPA Feature: gene Location: 18783-19421 bp Feature: domain Description: TIGR02646 Location: 18846-19263 bp Feature: domain Description: TIGR02646 Location: 1 8846-1 9263 bp Feature: gene Location: 19426-21147 bp Feature: domain Description: COG3950 Location: 19603-21013 bp Feature: domain Description: COG3950 Location: 1 9603-21 01 3 bp Feature: gene Location: 21148-22194 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21367-21961 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21 367-21 961 bp Feature: gene Location: 22365-22604 bp Feature: gene Location: 22679-24904 bp Feature: domain Description: Phage_GPA Location: 23105-24047 bp Feature: domain Description: Phage_GPA Location: 231 05-24047 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, Phage_GPA (pfam05840)

Seq: JWBZ01000157.1 Hafnia paralvei strain 1133_RAQU 728_29789_403337, whole genome shotgun sequence (29789 bp)
Overview 1 RT 1: 20156-25598 bp Neighborhood of RT #1 [20156, 25612] PRK09978 CybB RVT-Retrons umuC Feature: gene Location: 20156-20902 bp Feature: domain Description: PRK09978 Location: 20189-20891 bp Feature: domain Description: PRK09978 Location: 2 0189-2 0891 bp Feature: gene Location: 21174-21707 bp Feature: domain Description: CybB Location: 21180-21699 bp Feature: domain Description: CybB Location: 2 1180-2 1699 bp Feature: gene Location: 22418-23620 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22712-23351 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 2 712 -2 3351 bp Feature: gene Location: 23773-25089 bp Feature: gene Location: 25244-25612 bp Feature: domain Description: umuC Location: 25250-25598 bp Feature: domain Description: umuC Location: 2 52 50-2 5598 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09978 (DNA-binding transcriptional regulator GadX; Provisional), CybB (COG3038), RVT-Retrons, umuC (PRK03609)

Seq: JWBZ01000196.1 Hafnia paralvei strain 1133_RAQU 920_135012_1827119, whole genome shotgun sequence (135012 bp)
Overview 1 RT 1: 36737-40186 bp Neighborhood of RT #1 [36737, 40186] Resolvase RVT-Retrons Feature: gene Location: 36737-37408 bp Feature: domain Description: Resolvase Location: 36758-37175 bp Feature: domain Description: Resolvase Location: 3 6758-3 7175 bp Feature: gene Location: 37450-37632 bp Feature: gene Location: 37669-39375 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37819-38416 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 7819-3 8416 bp Feature: gene Location: 39511-40008 bp Feature: gene Location: 40007-40186 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Resolvase (smart00857), RVT-Retrons