myRT

myRT report for GCA_001061455.1_ASM106145v1

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Seq: JVUY01000389.1 Pseudomonas denitrificans (nomen rejiciendum) strain 1298_PDEN 1190_38488_586358, whole genome shotgun sequence (38488 bp)
Overview 1 RT 1: 1721-8907 bp Neighborhood of RT #1 [1721, 9071] STN TonB-siderophor YHI9 RVT-UG2 PRK06333 HxlR Feature: gene Location: 1721-4162 bp Feature: domain Description: STN Location: 1880-2033 bp Feature: domain Description: STN Location: 1 880-2033 bp Feature: domain Description: TonB-siderophor Location: 2141-4100 bp Feature: domain Description: TonB-siderophor Location: 21 41 -41 00 bp Feature: gene Location: 4323-5159 bp Feature: domain Description: YHI9 Location: 4335-5151 bp Feature: domain Description: YHI9 Location: 4335-51 51 bp Feature: gene Location: 5343-6689 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 5592-6378 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 5592-6378 bp Feature: gene Location: 7188-8456 bp Feature: domain Description: PRK06333 Location: 7194-8451 bp Feature: domain Description: PRK06333 Location: 71 94-8451 bp Feature: gene Location: 8565-9071 bp Feature: domain Description: HxlR Location: 8589-8907 bp Feature: domain Description: HxlR Location: 8589-8907 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT STN (smart00965), TonB-siderophor (TIGR01783), YHI9 (COG0384), RVT-UG2, PRK06333 (beta-ketoacyl-ACP synthase), HxlR (pfam01638)

Seq: JVUY01000051.1 Pseudomonas denitrificans (nomen rejiciendum) strain 1298_PDEN 180_45433_886016, whole genome shotgun sequence (45433 bp)
Overview 1 RT 1: 2-2947 bp Neighborhood of RT #1 [2, 2947] RVT-GII GIIM Feature: gene Location: 2-232 bp Feature: gene Location: 768-2036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 981-1638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 981-1638 bp Feature: domain Description: GIIM Note: maturase Location: 1716-1938 bp Feature: domain Description: GIIM Note: maturase Location: 1716-1938 bp Feature: gene Location: 2186-2584 bp Feature: gene Location: 2768-2947 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JVUY01000210.1 Pseudomonas denitrificans (nomen rejiciendum) strain 1298_PDEN 620_60156_1406285, whole genome shotgun sequence (60156 bp)
Overview 1 RT 1: 13953-19929 bp Neighborhood of RT #1 [13953, 19929] dut PRK05579 RVT_N RVT-GII GIIM HNHc PRK00024 Feature: gene Location: 13953-14408 bp Feature: domain Description: dut Location: 13959-14403 bp Feature: domain Description: dut Location: 13 959-14403 bp Feature: gene Location: 14416-15624 bp Feature: domain Description: PRK05579 Location: 14422-15616 bp Feature: domain Description: PRK05579 Location: 14422-15616 bp Feature: gene Location: 15836-17518 bp Feature: domain Description: RVT_N Location: 15845-16088 bp Feature: domain Description: RVT_N Location: 15845-16088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16136-16787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1613 6-16787 bp Feature: domain Description: GIIM Note: maturase Location: 16865-17093 bp Feature: domain Description: GIIM Note: maturase Location: 16865-17093 bp Feature: domain Description: HNHc Note: nucleases Location: 17321-17477 bp Feature: domain Description: HNHc Note: nucleases Location: 173 21-17477 bp Feature: gene Location: 18690-19364 bp Feature: domain Description: PRK00024 Location: 18693-19362 bp Feature: domain Description: PRK00024 Location: 18693 -193 62 bp Feature: gene Location: 19381-19929 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), PRK05579 (bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK00024 (DNA repair protein RadC)

Seq: JVUY01000315.1 Pseudomonas denitrificans (nomen rejiciendum) strain 1298_PDEN 942_94015_1899489, whole genome shotgun sequence (94015 bp)
Overview 1 RT 1: 57629-67935 bp Neighborhood of RT #1 [57629, 67937] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 57629-58750 bp Feature: domain Description: COG3177 Location: 57647-58739 bp Feature: domain Description: COG3177 Location: 5764 7-58739 bp Feature: gene Location: 59009-59146 bp Feature: gene Location: 59474-61159 bp Feature: domain Description: RVT_N Location: 59531-59771 bp Feature: domain Description: RVT_N Location: 59531-59771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59819-60455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59819-604 55 bp Feature: domain Description: GIIM Note: maturase Location: 60509-60740 bp Feature: domain Description: GIIM Note: maturase Location: 60509-6074 0 bp Feature: domain Description: HNH Note: nucleases Location: 60992-61130 bp Feature: domain Description: HNH Note: nucleases Location: 60992-61130 bp Feature: gene Location: 62240-65977 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 62348-63005 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 6234 8-63005 bp Feature: domain Description: PRK09776 Location: 63218-63689 bp Feature: domain Description: PRK09776 Location: 63218-63689 bp Feature: domain Description: PAS Location: 63746-64271 bp Feature: domain Description: PAS Location: 6374 6-64 271 bp Feature: domain Description: PRK10060 Location: 64280-65927 bp Feature: domain Description: PRK10060 Location: 64 280-65927 bp Feature: gene Location: 66084-67937 bp Feature: domain Description: PRK05658 Location: 66096-67935 bp Feature: domain Description: PRK05658 Location: 66096-67935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)