myRT

myRT report for GCA_001061475.1_ASM106147v1

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Seq: JVUW01000110.1 Pseudomonas aeruginosa strain 130_PAER 1047_140098_3373196_889_,...,784+, whole genome shotgun sequence (140098 bp)
Overview 1 RT 1: 69456-75060 bp Neighborhood of RT #1 [69456, 75083] MnuA_DNase1-like IS5 RVT-GII GIIM IS5 ATPgrasp_ST ATPgrasp_Ter Feature: gene Location: 69456-70460 bp Feature: domain Description: MnuA_DNase1-like Location: 69531-70269 bp Feature: domain Description: MnuA_DNase1 -like Location: 69531 -70269 bp Feature: gene Location: 70500-71039 bp Feature: domain Description: IS5 Location: 70689-71016 bp Feature: domain Description: IS5 Location: 70689-71 01 6 bp Feature: gene Location: 71532-72800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71745-72402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 745-72402 bp Feature: domain Description: GIIM Note: maturase Location: 72480-72702 bp Feature: domain Description: GIIM Note: maturase Location: 72480-72702 bp Feature: gene Location: 72872-73330 bp Feature: domain Description: IS5 Location: 72875-73304 bp Feature: domain Description: IS5 Location: 72875-73304 bp Feature: gene Location: 73983-75083 bp Feature: domain Description: ATPgrasp_ST Location: 74397-74589 bp Feature: domain Description: ATPgrasp_ST Location: 74397-74589 bp Feature: domain Description: ATPgrasp_Ter Location: 74685-75060 bp Feature: domain Description: ATPgrasp_Ter Location: 74685-75060 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MnuA_DNase1-like (cd10283), IS5 (COG3039), RVT-GII, GIIM (pfam08388), ATPgrasp_ST (pfam14397), ATPgrasp_Ter (pfam15632)

Seq: JVUW01000056.1 Pseudomonas aeruginosa strain 130_PAER 991_189950_5311375_372_,...,856_, whole genome shotgun sequence (189950 bp)
Overview 1 RT 1: 105136-115442 bp 2 RT 2: 131701-140521 bp Neighborhood of RT #1 [105136, 115444] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [131701, 140550] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 105136-106257 bp Feature: domain Description: COG3177 Location: 105154-106246 bp Feature: domain Description: COG3177 Location: 105154-1062 46 bp Feature: gene Location: 106516-106653 bp Feature: gene Location: 106981-108666 bp Feature: RT Description: RVT_N Location: 107038-107278 bp Feature: RT Description: RVT_N Location: 107038-1072 78 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107326-107962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10732 6-107962 bp Feature: domain Description: GIIM Note: maturase Location: 108016-108247 bp Feature: domain Description: GIIM Note: maturase Location: 108016-1082 47 bp Feature: domain Description: HNH Note: nucleases Location: 108499-108637 bp Feature: domain Description: HNH Note: nucleases Location: 108499-108637 bp Feature: gene Location: 109747-113484 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 109855-110512 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 109855-110512 bp Feature: domain Description: PRK09776 Location: 110725-111196 bp Feature: domain Description: PRK09776 Location: 11072 5-111196 bp Feature: domain Description: PAS Location: 111241-111778 bp Feature: domain Description: PAS Location: 1112 41-111778 bp Feature: domain Description: PRK10060 Location: 111787-113434 bp Feature: domain Description: PRK10060 Location: 111787-113434 bp Feature: gene Location: 113591-115444 bp Feature: domain Description: PRK05658 Location: 113603-115442 bp Feature: domain Description: PRK05658 Location: 113603-115442 bp Feature: gene Location: 131701-132915 bp Feature: domain Description: PRK10770 Location: 131713-132907 bp Feature: domain Description: PRK10770 Location: 131713-132 907 bp Feature: gene Location: 132974-135745 bp Feature: domain Description: LptD Location: 133169-135731 bp Feature: domain Description: LptD Location: 133169-135731 bp Feature: gene Location: 135878-137590 bp Feature: RT Description: RVT_N Location: 135935-136178 bp Feature: RT Description: RVT_N Location: 135935-136178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136223-136859 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1362 2 3-136859 bp Feature: domain Description: YkfC Location: 137069-137219 bp Feature: domain Description: YkfC Location: 137069-1372 19 bp Feature: domain Description: HNH Note: nucleases Location: 137396-137534 bp Feature: domain Description: HNH Note: nucleases Location: 137396-137534 bp Feature: gene Location: 138863-139879 bp Feature: domain Description: COG3178 Location: 138866-139865 bp Feature: domain Description: COG3178 Location: 138866-139865 bp Feature: gene Location: 139876-140550 bp Feature: domain Description: NTP_transferase_like_1 Location: 139882-140521 bp Feature: domain Description: NTP_transferase_like_1 Location: 139882 -14052 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)