myRT

myRT report for GCA_001061585.1_ASM106158v1

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Seq: JVTQ01000560.1 Pseudomonas aeruginosa strain 1324_PAER 1865_1798_28606, whole genome shotgun sequence (1798 bp)
Overview 1 RT 1: 2-1613 bp Neighborhood of RT #1 [2, 1615] RVT_N RVT-GII YkfC HNH Feature: gene Location: 2-1615 bp Feature: RT Description: RVT_N Location: 59-302 bp Feature: RT Description: RVT_N Location: 59-302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 347-983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 347-983 bp Feature: domain Description: YkfC Location: 1190-1343 bp Feature: domain Description: YkfC Location: 1 1 90-1 343 bp Feature: domain Description: HNH Note: nucleases Location: 1520-1613 bp Feature: domain Description: HNH Note: nucleases Location: 1 520-1 61 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844)

Seq: JVTQ01000903.1 Pseudomonas aeruginosa strain 1324_PAER 2755_7926_284706_1132+,1589_, whole genome shotgun sequence (7926 bp)
Overview 1 RT 1: 4990-7923 bp Neighborhood of RT #1 [4990, 7923] RVT-GII GIIM Feature: gene Location: 4990-5169 bp Feature: gene Location: 5353-5751 bp Feature: gene Location: 5901-7169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6114-6771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6114-6771 bp Feature: domain Description: GIIM Note: maturase Location: 6849-7071 bp Feature: domain Description: GIIM Note: maturase Location: 6849-7071 bp Feature: gene Location: 7573-7923 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JVTQ01000930.1 Pseudomonas aeruginosa strain 1324_PAER 2782_15851_227593_1400_,...,443+, whole genome shotgun sequence (15851 bp)
Overview 1 RT 1: 11704-15632 bp Neighborhood of RT #1 [11704, 15661] NERD COG3177 RVT_N RVT-GII GIIM HNH Feature: gene Location: 11704-12039 bp Feature: domain Description: NERD Location: 11803-11974 bp Feature: domain Description: NERD Location: 11803 -11974 bp Feature: gene Location: 12132-13253 bp Feature: domain Description: COG3177 Location: 12150-13242 bp Feature: domain Description: COG3 177 Location: 12150-13 242 bp Feature: gene Location: 13976-15661 bp Feature: RT Description: RVT_N Location: 14033-14273 bp Feature: RT Description: RVT_N Location: 1403 3 -14273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14321-14957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143 21-14957 bp Feature: domain Description: GIIM Note: maturase Location: 15011-15242 bp Feature: domain Description: GIIM Note: maturase Location: 15011-15242 bp Feature: domain Description: HNH Note: nucleases Location: 15494-15632 bp Feature: domain Description: HNH Note: nucleases Location: 15494-1563 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: JVTQ01000948.1 Pseudomonas aeruginosa strain 1324_PAER 2800_7223_284648_1529+,1589+, whole genome shotgun sequence (7223 bp)
Overview 1 RT 1: 2-3229 bp Neighborhood of RT #1 [2, 3229] DUF772 RVT-GII GIIM Feature: gene Location: 2-661 bp Feature: domain Description: DUF772 Location: 170-365 bp Feature: domain Description: DUF772 Location: 170-365 bp Feature: gene Location: 1050-2318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1263-1920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1263-1920 bp Feature: domain Description: GIIM Note: maturase Location: 1998-2220 bp Feature: domain Description: GIIM Note: maturase Location: 1998-2220 bp Feature: gene Location: 2468-2866 bp Feature: gene Location: 3050-3229 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF772 (pfam05598)

Seq: JVTQ01000953.1 Pseudomonas aeruginosa strain 1324_PAER 2805_26008_498308_1589+,2341+,1380+, whole genome shotgun sequence (26008 bp)
Overview 1 RT 1: 1-2937 bp Neighborhood of RT #1 [1, 2937] RVT-GII GIIM Feature: gene Location: 1-222 bp Feature: gene Location: 758-2026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 971-1628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 971-1628 bp Feature: domain Description: GIIM Note: maturase Location: 1706-1928 bp Feature: domain Description: GIIM Note: maturase Location: 1706-1928 bp Feature: gene Location: 2176-2574 bp Feature: gene Location: 2758-2937 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)