myRT

myRT report for GCA_001062995.1_ASM106299v1

Download annotations/find similar RTs

Seq: JVPD01000020.1 Pseudomonas aeruginosa strain 230_PAER 698_184029_3746778_4_,...,497+, whole genome shotgun sequence (183782 bp)
Overview 1 RT 1: 71755-84086 bp Neighborhood of RT #1 [71755, 84241] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH HipA_C IMPa_N_2 IMPa_helical Peptidase_M60 Feature: gene Location: 71755-73608 bp Feature: domain Description: PRK05658 Location: 71767-73606 bp Feature: domain Description: PRK05658 Location: 71 767-73606 bp Feature: gene Location: 73715-77452 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 73823-74480 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 73823-74480 bp Feature: domain Description: PRK09776 Location: 74693-75164 bp Feature: domain Description: PRK09776 Location: 74693-751 64 bp Feature: domain Description: PAS Location: 75209-75746 bp Feature: domain Description: PAS Location: 75209-75746 bp Feature: domain Description: PRK10060 Location: 75755-77402 bp Feature: domain Description: PRK1 0060 Location: 75755-77402 bp Feature: gene Location: 78533-80218 bp Feature: RT Description: RVT_N Location: 78590-78830 bp Feature: RT Description: RVT_N Location: 78590-78830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78878-79514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78878-7951 4 bp Feature: domain Description: GIIM Note: maturase Location: 79568-79799 bp Feature: domain Description: GIIM Note: maturase Location: 79568-79799 bp Feature: domain Description: HNH Note: nucleases Location: 80051-80180 bp Feature: domain Description: HNH Note: nucleases Location: 80051 -801 80 bp Feature: gene Location: 80522-80839 bp Feature: domain Description: HipA_C Location: 80555-80723 bp Feature: domain Description: HipA_C Location: 80555-80723 bp Feature: gene Location: 81515-84241 bp Feature: domain Description: IMPa_N_2 Location: 81722-82304 bp Feature: domain Description: IMPa_N_2 Location: 81 722-82304 bp Feature: domain Description: IMPa_helical Location: 82385-82712 bp Feature: domain Description: IMPa_helical Location: 82385-8271 2 bp Feature: domain Description: Peptidase_M60 Location: 83156-84086 bp Feature: domain Description: Peptidase_M60 Location: 831 56-84086 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), HipA_C (pfam07804)
IMPa_N_2 (pfam18650), IMPa_helical (pfam18642), Peptidase_M60 (pfam13402)

Seq: JVPD01000091.1 Pseudomonas aeruginosa strain 230_PAER 769_55363_1260426_359_,...,424+, whole genome shotgun sequence (55363 bp)
Overview 1 RT 1: 40047-43046 bp Neighborhood of RT #1 [40047, 43046] Avd_like RVT-DGRs DUF551 Feature: gene Location: 40047-40631 bp Feature: gene Location: 40670-41026 bp Feature: domain Description: Avd_like Location: 40697-41000 bp Feature: domain Description: Avd_like Location: 40697-41000 bp Feature: gene Location: 41299-42438 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 41476-42235 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 41476-42 2 35 bp Feature: gene Location: 42461-42724 bp Feature: domain Description: DUF551 Location: 42470-42716 bp Feature: domain Description: DUF551 Location: 42 470-42 716 bp Feature: gene Location: 42741-43046 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, DUF551 (pfam04448)