myRT

myRT report for GCA_001063095.1_ASM106309v1

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Seq: JVNX01000164.1 Shigella boydii strain 260_SBOY 1018_24649_412301, whole genome shotgun sequence (24649 bp)
Overview 1 RT 1: 848-4318 bp Neighborhood of RT #1 [848, 4425] Arm-DNA-bind_3 RVT-Retrons PRK09678 Feature: gene Location: 848-1150 bp Feature: domain Description: Arm-DNA-bind_3 Location: 857-1109 bp Feature: domain Description: Arm-DNA-bind_3 Location: 857-1 1 09 bp Feature: gene Location: 1334-1579 bp Feature: gene Location: 1605-2537 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1707-2301 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 707-2301 bp Feature: gene Location: 2539-3525 bp Feature: gene Location: 4153-4425 bp Feature: domain Description: PRK09678 Location: 4162-4318 bp Feature: domain Description: PRK09678 Location: 41 62-431 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional), Arm-DNA-bind_3 (pfam13356)

Seq: JVNX01000188.1 Shigella boydii strain 260_SBOY 1133_42548_708533_166_,662_,13+, whole genome shotgun sequence (42548 bp)
Overview 1 RT 1: 9696-12710 bp Neighborhood of RT #1 [9696, 12775] PHA02517 PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 9696-9908 bp Feature: domain Description: PHA02517 Location: 9699-9900 bp Feature: domain Description: PHA02 517 Location: 9699-9900 bp Feature: gene Location: 9963-10112 bp Feature: domain Description: PHA02517 Location: 9966-10110 bp Feature: domain Description: PHA02 517 Location: 9966-10110 bp Feature: gene Location: 10235-11758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10508-11240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10508-112 40 bp Feature: domain Description: GIIM Note: maturase Location: 11315-11513 bp Feature: domain Description: GIIM Note: maturase Location: 11315-11513 bp Feature: gene Location: 11712-12137 bp Feature: gene Location: 12350-12775 bp Feature: domain Description: PHA02517 Location: 12371-12710 bp Feature: domain Description: PHA02 517 Location: 12 371-12 710 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)