myRT

myRT report for GCA_001063755.1_ASM106375v1

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Seq: JVBQ01000105.1 Klebsiella pneumoniae strain 570_KPNE 1135_4055_145147_770_,...,782+, whole genome shotgun sequence (4055 bp)
Overview 1 RT 1: 968-3592 bp Neighborhood of RT #1 [968, 3837] InsE PHA02517 RVT-GII GIIM Feature: gene Location: 968-1270 bp Feature: domain Description: InsE Location: 977-1259 bp Feature: domain Description: InsE Location: 977-1 259 bp Feature: gene Location: 1297-1722 bp Feature: domain Description: PHA02517 Location: 1321-1657 bp Feature: domain Description: PHA0251 7 Location: 1 321 -1 657 bp Feature: gene Location: 2314-3837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2587-3319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2587-331 9 bp Feature: domain Description: GIIM Note: maturase Location: 3394-3592 bp Feature: domain Description: GIIM Note: maturase Location: 3394-3592 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: JVBQ01000108.1 Klebsiella pneumoniae strain 570_KPNE 1138_20630_684734_782_,...,982+, whole genome shotgun sequence (20630 bp)
Overview 1 RT 1: 219-3898 bp Neighborhood of RT #1 [219, 3996] RVT-GII GIIM InsE PHA02517 DUF2913 Feature: gene Location: 219-1742 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 492-1224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 492 -12 2 4 bp Feature: domain Description: GIIM Note: maturase Location: 1299-1497 bp Feature: domain Description: GIIM Note: maturase Location: 12 99-1497 bp Feature: gene Location: 2334-3071 bp Feature: domain Description: InsE Location: 2346-2598 bp Feature: domain Description: InsE Location: 2 346-2 598 bp Feature: domain Description: PHA02517 Location: 2670-3006 bp Feature: domain Description: PHA02 517 Location: 2 670-3006 bp Feature: gene Location: 3385-3996 bp Feature: domain Description: DUF2913 Location: 3418-3898 bp Feature: domain Description: DUF2 913 Location: 3418-3898 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), DUF2913 (pfam11140)

Seq: JVBQ01000110.1 Klebsiella pneumoniae strain 570_KPNE 1141_132741_1703561_798_,...,191+, whole genome shotgun sequence (132741 bp)
Overview 1 RT 1: 46894-54068 bp Neighborhood of RT #1 [46894, 54085] EAL RVT-UG4 FimD FimC Feature: gene Location: 46894-47100 bp Feature: gene Location: 47190-48044 bp Feature: domain Description: EAL Location: 47874-48027 bp Feature: domain Description: EAL Location: 47874-48027 bp Feature: gene Location: 48686-50716 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 49094-49538 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 49094-4953 8 bp Feature: gene Location: 50716-53325 bp Feature: domain Description: FimD Location: 50773-53314 bp Feature: domain Description: FimD Location: 50773 -53 3 14 bp Feature: gene Location: 53357-54085 bp Feature: domain Description: FimC Location: 53405-54068 bp Feature: domain Description: FimC Location: 53 405-54068 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EAL (smart00052), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: JVBQ01000129.1 Klebsiella pneumoniae strain 570_KPNE 1163_20941_489278_983_,...,374+, whole genome shotgun sequence (20941 bp)
Overview 1 RT 1: 6183-11658 bp Neighborhood of RT #1 [6183, 11663] Plasmid_stab_B Plasmid_stab_B StbA RVT-GII PRK10276 umuC Feature: gene Location: 6183-6854 bp Feature: domain Description: Plasmid_stab_B Location: 6198-6405 bp Feature: domain Description: Plasmid_stab_B Location: 6198-64 05 bp Feature: domain Description: Plasmid_stab_B Location: 6510-6717 bp Feature: domain Description: Plasmid_stab_B Location: 6510-6717 bp Feature: gene Location: 6857-7828 bp Feature: domain Description: StbA Location: 6860-7805 bp Feature: domain Description: StbA Location: 6860-7805 bp Feature: gene Location: 8077-9564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8482-9172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84 82-9172 bp Feature: gene Location: 9718-10392 bp Feature: domain Description: PRK10276 Location: 9970-10378 bp Feature: domain Description: PRK10276 Location: 9970-10378 bp Feature: gene Location: 10392-11663 bp Feature: domain Description: umuC Location: 10395-11658 bp Feature: domain Description: umuC Location: 10395-11658 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Plasmid_stab_B (pfam10784), StbA (pfam06406), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)