myRT

myRT report for GCA_001063835.1_ASM106383v1

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Seq: JVAO01000034.1 Escherichia coli strain 60_SBOY 1619_6536_146417_1+,337+,1618_, whole genome shotgun sequence (6536 bp)
Overview 1 RT 1: 3-1531 bp Neighborhood of RT #1 [3, 1605] InsE RVT-GII RVT-GII group_II_RT_mat IS285 Feature: gene Location: 3-263 bp Feature: domain Description: InsE Location: 6-264 bp Feature: domain Description: InsE Location: 6-264 bp Feature: gene Location: 302-505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 347-503 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 347-503 bp Feature: gene Location: 539-775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 542-722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 542-722 bp Feature: gene Location: 768-980 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 771-969 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 771 -969 bp Feature: gene Location: 1123-1605 bp Feature: domain Description: IS285 Location: 1153-1531 bp Feature: domain Description: IS285 Location: 1 1 53-1 531 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, group_II_RT_mat (TIGR04416), IS285 (COG3328)

Seq: JVAO01000042.1 Escherichia coli strain 60_SBOY 1630_1680_142484_153+,199+, whole genome shotgun sequence (1680 bp)
Overview 1 RT 1: 2-1678 bp Neighborhood of RT #1 [2, 1677] RVT-GII GIIM PHA02517 Feature: gene Location: 2-1249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-731 bp Feature: domain Description: GIIM Note: maturase Location: 806-1004 bp Feature: domain Description: GIIM Note: maturase Location: 806-1004 bp Feature: gene Location: 1426-1677 bp Feature: domain Description: PHA02517 Location: 1429-1678 bp Feature: domain Description: PHA02 517 Location: 142 9-1678 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: JVAO01000048.1 Escherichia coli strain 60_SBOY 1636_2272_277312_249_,153+, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 0-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 173 7-193 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JVAO01000049.1 Escherichia coli strain 60_SBOY 1637_12335_611966_249_,1452+,811+, whole genome shotgun sequence (12335 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 1943] RVT-GII PRK10173 PRK10173 Feature: gene Location: 1-363 bp Feature: gene Location: 657-1160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-999 bp Feature: gene Location: 1199-1510 bp Feature: domain Description: PRK10173 Location: 1202-1421 bp Feature: domain Description: PRK10173 Location: 1202-14 21 bp Feature: gene Location: 1494-1943 bp Feature: domain Description: PRK10173 Location: 1497-1935 bp Feature: domain Description: PRK10173 Location: 14 97-1935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional)

Seq: JVAO01000170.1 Escherichia coli strain 60_SBOY 1767_113856_2527431_1241+,...,635+, whole genome shotgun sequence (113856 bp)
Overview 1 RT 1: 57746-61687 bp Neighborhood of RT #1 [57746, 61687] RVT-Retrons Feature: gene Location: 57746-58885 bp Feature: gene Location: 58931-59098 bp Feature: gene Location: 59120-60892 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 59279-59897 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5 9279-5 9897 bp Feature: gene Location: 61113-61256 bp Feature: gene Location: 61448-61687 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: JVAO01000194.1 Escherichia coli strain 60_SBOY 1795_3233_222702_1596+,...,153_, whole genome shotgun sequence (3233 bp)
Overview 1 RT 1: 1079-2987 bp Neighborhood of RT #1 [1079, 3232] InsE PHA02517 RVT-GII GIIM Feature: gene Location: 1079-1483 bp Feature: domain Description: InsE Location: 1109-1445 bp Feature: domain Description: InsE Location: 1109-1445 bp Feature: gene Location: 1512-1868 bp Feature: domain Description: PHA02517 Location: 1515-1824 bp Feature: domain Description: PHA02517 Location: 1515-1824 bp Feature: gene Location: 1985-3232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1988-2714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1988-2714 bp Feature: domain Description: GIIM Note: maturase Location: 2789-2987 bp Feature: domain Description: GIIM Note: maturase Location: 2789-2987 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: JVAO01000203.1 Escherichia coli strain 60_SBOY 1805_13124_311238_1605_,...,867+, whole genome shotgun sequence (13124 bp)
Overview 1 RT 1: 8485-11267 bp Neighborhood of RT #1 [8485, 12616] GerD RVT-UG1 Feature: gene Location: 8485-8919 bp Feature: domain Description: GerD Location: 8563-8677 bp Feature: domain Description: GerD Location: 8563-867 7 bp Feature: gene Location: 8928-10043 bp Feature: gene Location: 10145-12616 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 10757-11267 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 107 57 -11267 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GerD (pfam17898), RVT-UG1