myRT

myRT report for GCA_001064905.1_ASM106490v1

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Seq: JVHM01000006.1 Pseudomonas aeruginosa strain 427_PAER 652_156090_3621523_14+,...,65+, whole genome shotgun sequence (155899 bp)
Overview 1 RT 1: 61732-70576 bp 2 RT 2: 86841-97511 bp Neighborhood of RT #1 [61732, 70584] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [86841, 97576] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 NERD Feature: gene Location: 61732-62406 bp Feature: domain Description: NTP_transferase_like_1 Location: 61738-62377 bp Feature: domain Description: NTP_transferase_like_1 Location: 61 738-62377 bp Feature: gene Location: 62403-63419 bp Feature: domain Description: COG3178 Location: 62406-63405 bp Feature: domain Description: COG31 78 Location: 62406-63405 bp Feature: gene Location: 64692-66404 bp Feature: RT Description: RVT_N Location: 64749-64992 bp Feature: RT Description: RVT_N Location: 64749-64992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65037-65673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65037-65673 bp Feature: domain Description: YkfC Location: 65880-66033 bp Feature: domain Description: YkfC Location: 65880-66033 bp Feature: domain Description: HNH Note: nucleases Location: 66210-66348 bp Feature: domain Description: HNH Note: nucleases Location: 6621 0-66348 bp Feature: gene Location: 66537-69311 bp Feature: domain Description: LptD Location: 66732-69297 bp Feature: domain Description: LptD Location: 66732-69297 bp Feature: gene Location: 69370-70584 bp Feature: domain Description: PRK10770 Location: 69382-70576 bp Feature: domain Description: PRK1 0770 Location: 69382-70576 bp Feature: gene Location: 86841-88694 bp Feature: domain Description: PRK05658 Location: 86853-88692 bp Feature: domain Description: PRK05658 Location: 86853-88692 bp Feature: gene Location: 88801-92538 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 88909-89566 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 88909-89566 bp Feature: domain Description: PRK09776 Location: 89779-90250 bp Feature: domain Description: PRK09776 Location: 89779-90250 bp Feature: domain Description: PAS Location: 90295-90832 bp Feature: domain Description: PAS Location: 90295-90832 bp Feature: domain Description: PRK10060 Location: 90841-92488 bp Feature: domain Description: PRK1 0060 Location: 90841 -92488 bp Feature: gene Location: 93619-95304 bp Feature: RT Description: RVT_N Location: 93676-93916 bp Feature: RT Description: RVT_N Location: 93676-9391 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93964-94600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93964-94600 bp Feature: domain Description: GIIM Note: maturase Location: 94654-94885 bp Feature: domain Description: GIIM Note: maturase Location: 94654-94885 bp Feature: domain Description: HNH Note: nucleases Location: 95137-95275 bp Feature: domain Description: HNH Note: nucleases Location: 951 37-95275 bp Feature: gene Location: 96027-97148 bp Feature: domain Description: COG3177 Location: 96045-97137 bp Feature: domain Description: COG31 77 Location: 96045-971 37 bp Feature: gene Location: 97241-97576 bp Feature: domain Description: NERD Location: 97340-97511 bp Feature: domain Description: NERD Location: 97340-9751 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein ), NERD (pfam08378)