myRT

myRT report for GCA_001065165.1_ASM106516v1

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Seq: JVFJ01000075.1 Escherichia coli strain 482_SBOY 1179_6095_152925, whole genome shotgun sequence (6095 bp)
Overview 1 RT 1: 1-1248 bp Neighborhood of RT #1 [1, 1322] RVT-GII RVT-GII group_II_RT_mat IS285 Feature: gene Location: 1-222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64-220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64-220 bp Feature: gene Location: 256-492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259-439 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259-439 bp Feature: gene Location: 485-697 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 488-686 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 488-686 bp Feature: gene Location: 840-1322 bp Feature: domain Description: IS285 Location: 870-1248 bp Feature: domain Description: IS285 Location: 870-1 248 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416), IS285 (COG3328)

Seq: JVFJ01000011.1 Escherichia coli strain 482_SBOY 138_11123_289266, whole genome shotgun sequence (11123 bp)
Overview 1 RT 1: 499-4388 bp Neighborhood of RT #1 [499, 4630] RVT-UG1 GerD Feature: gene Location: 499-2970 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 1111-1621 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 1111-162 1 bp Feature: gene Location: 3072-4187 bp Feature: gene Location: 4196-4630 bp Feature: domain Description: GerD Location: 4274-4388 bp Feature: domain Description: GerD Location: 42 74-4388 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG1, GerD (pfam17898)

Seq: JVFJ01000097.1 Escherichia coli strain 482_SBOY 1546_3976_239038_26+,...,1036_, whole genome shotgun sequence (3976 bp)
Overview 1 RT 1: 2302-3975 bp Neighborhood of RT #1 [2302, 3974] InsE PHA02517 RVT-GII Feature: gene Location: 2302-2604 bp Feature: domain Description: InsE Location: 2311-2593 bp Feature: domain Description: InsE Location: 23 11-2593 bp Feature: gene Location: 2631-3056 bp Feature: domain Description: PHA02517 Location: 2655-2991 bp Feature: domain Description: PHA02517 Location: 2655-2991 bp Feature: gene Location: 3648-3974 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3921-3975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 921-3 975 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII

Seq: JVFJ01000104.1 Escherichia coli strain 482_SBOY 1553_3440_225110_147+,...,545+, whole genome shotgun sequence (3440 bp)
Overview 1 RT 1: 1-2107 bp Neighborhood of RT #1 [1, 2145] RVT-GII GIIM PHA02517 InsE Feature: gene Location: 1-1239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 -721 bp Feature: domain Description: GIIM Note: maturase Location: 796-994 bp Feature: domain Description: GIIM Note: maturase Location: 796-994 bp Feature: gene Location: 1356-1712 bp Feature: domain Description: PHA02517 Location: 1359-1668 bp Feature: domain Description: PHA02517 Location: 1359-1668 bp Feature: gene Location: 1741-2145 bp Feature: domain Description: InsE Location: 1771-2107 bp Feature: domain Description: InsE Location: 1771-2107 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)

Seq: JVFJ01000105.1 Escherichia coli strain 482_SBOY 1554_11344_551228_171+,1036+, whole genome shotgun sequence (11344 bp)
Overview 1 RT 1: 9402-11341 bp Neighborhood of RT #1 [9402, 11341] PRK10173 PRK10173 RVT-GII Feature: gene Location: 9402-9851 bp Feature: domain Description: PRK10173 Location: 9405-9843 bp Feature: domain Description: PRK10173 Location: 9405 -9843 bp Feature: gene Location: 9835-10146 bp Feature: domain Description: PRK10173 Location: 9838-10057 bp Feature: domain Description: PRK10173 Location: 9838-1005 7 bp Feature: gene Location: 10185-10688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10458-10527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1045 8-105 27 bp Feature: gene Location: 10982-11341 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional), RVT-GII

Seq: JVFJ01000156.1 Escherichia coli strain 482_SBOY 1606_88376_2158938_867_,...,322+, whole genome shotgun sequence (88376 bp)
Overview 1 RT 1: 49682-53623 bp Neighborhood of RT #1 [49682, 53623] RVT-Retrons Feature: gene Location: 49682-49921 bp Feature: gene Location: 50228-50404 bp Feature: gene Location: 50477-52249 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50636-51254 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 506 36 -51254 bp Feature: gene Location: 52271-52438 bp Feature: gene Location: 52484-53623 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: JVFJ01000172.1 Escherichia coli strain 482_SBOY 1622_2753_172275_980+,1104_,147_, whole genome shotgun sequence (2753 bp)
Overview 1 RT 1: 390-2505 bp Neighborhood of RT #1 [390, 2750] HTH_38 Tra8 RVT-GII GIIM Feature: gene Location: 390-1091 bp Feature: domain Description: HTH_38 Location: 399-513 bp Feature: domain Description: HTH_38 Location: 399-513 bp Feature: domain Description: Tra8 Location: 549-945 bp Feature: domain Description: Tra8 Location: 549-945 bp Feature: gene Location: 1243-1428 bp Feature: gene Location: 1515-2750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1518-2232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1518-2232 bp Feature: domain Description: GIIM Note: maturase Location: 2307-2505 bp Feature: domain Description: GIIM Note: maturase Location: 2307 -2505 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_38 (pfam13936), Tra8 (COG2826), RVT-GII, GIIM (pfam08388)

Seq: JVFJ01000173.1 Escherichia coli strain 482_SBOY 1623_2272_250159_1036_,147+, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JVFJ01000242.1 Escherichia coli strain 482_SBOY 1695_1747_191186_1541_,...,1036_, whole genome shotgun sequence (1747 bp)
Overview 1 RT 1: 1-1746 bp Neighborhood of RT #1 [1, 1745] InsE PHA02517 RVT-GII Feature: gene Location: 1-348 bp Feature: domain Description: InsE Location: 25-346 bp Feature: domain Description: InsE Location: 25-346 bp Feature: gene Location: 348-827 bp Feature: domain Description: PHA02517 Location: 408-762 bp Feature: domain Description: PHA02517 Location: 408-762 bp Feature: gene Location: 1419-1745 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1692-1746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 169 2-1746 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII