myRT

myRT report for GCA_001065925.1_ASM106592v1

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Seq: JUXI01000013.1 Pseudomonas aeruginosa strain 681_PAER 18_3119_50860, whole genome shotgun sequence (3119 bp)
Overview 1 RT 1: 2-2947 bp Neighborhood of RT #1 [2, 2947] RVT-GII GIIM Feature: gene Location: 2-364 bp Feature: gene Location: 768-2036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 981-1638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 981 -1 638 bp Feature: domain Description: GIIM Note: maturase Location: 1716-1938 bp Feature: domain Description: GIIM Note: maturase Location: 1 71 6-1 938 bp Feature: gene Location: 2186-2584 bp Feature: gene Location: 2768-2947 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JUXI01000107.1 Pseudomonas aeruginosa strain 681_PAER 236_19386_269434, whole genome shotgun sequence (19386 bp)
Overview 1 RT 1: 2320-9431 bp Neighborhood of RT #1 [2320, 9445] AdoMet_MTases DEXHc_Snf RVT_N RVT-GII GIIM HNHc DEXHc_Snf SF2_C_SNF InsE Feature: gene Location: 2320-3765 bp Feature: domain Description: AdoMet_MTases Location: 2443-2809 bp Feature: domain Description: AdoMet_MTases Location: 2 443-2 809 bp Feature: gene Location: 3865-4896 bp Feature: domain Description: DEXHc_Snf Location: 4063-4309 bp Feature: domain Description: DEXHc_Snf Location: 4063-4309 bp Feature: gene Location: 5493-7211 bp Feature: domain Description: RVT_N Location: 5550-5787 bp Feature: domain Description: RVT_N Location: 5550-5787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5838-6489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5838-6489 bp Feature: domain Description: GIIM Note: maturase Location: 6543-6774 bp Feature: domain Description: GIIM Note: maturase Location: 6543-6774 bp Feature: domain Description: HNHc Note: nucleases Location: 7008-7164 bp Feature: domain Description: HNHc Note: nucleases Location: 7008-7164 bp Feature: gene Location: 7279-8538 bp Feature: domain Description: DEXHc_Snf Location: 7312-7468 bp Feature: domain Description: DEXHc_Snf Location: 7312 -7468 bp Feature: domain Description: SF2_C_SNF Location: 7996-8374 bp Feature: domain Description: SF2 _C_SNF Location: 7996-8374 bp Feature: gene Location: 9152-9445 bp Feature: domain Description: InsE Location: 9161-9431 bp Feature: domain Description: InsE Location: 9161-9431 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AdoMet_MTases (cl17173), DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), SF2_C_SNF (cd18793), InsE (COG2963)

Seq: JUXI01000016.1 Pseudomonas aeruginosa strain 681_PAER 25_1514_27045, whole genome shotgun sequence (1514 bp)
Overview 1 RT 1: 1-1507 bp Neighborhood of RT #1 [1, 1512] RVT_N RVT-GII GIIM HNH Feature: gene Location: 1-1512 bp Feature: domain Description: RVT_N Location: 4-190 bp Feature: domain Description: RVT_N Location: 4-190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 238-874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 8-874 bp Feature: domain Description: GIIM Note: maturase Location: 928-1159 bp Feature: domain Description: GIIM Note: maturase Location: 928-1159 bp Feature: domain Description: HNH Note: nucleases Location: 1411-1507 bp Feature: domain Description: HNH Note: nucleases Location: 1411-1507 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: JUXI01000313.1 Pseudomonas aeruginosa strain 681_PAER 686_1514_28867, whole genome shotgun sequence (1514 bp)
Overview 1 RT 1: 1-1507 bp Neighborhood of RT #1 [1, 1512] RVT_N RVT-GII YkfC HNH Feature: gene Location: 1-1512 bp Feature: domain Description: RVT_N Location: 4-193 bp Feature: domain Description: RVT_N Location: 4 -193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 238-874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 238-874 bp Feature: domain Description: YkfC Location: 1084-1237 bp Feature: domain Description: YkfC Location: 1084 -1237 bp Feature: domain Description: HNH Note: nucleases Location: 1411-1507 bp Feature: domain Description: HNH Note: nucleases Location: 14 11-1507 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844)

Seq: JUXI01000315.1 Pseudomonas aeruginosa strain 681_PAER 688_18935_291479, whole genome shotgun sequence (18935 bp)
Overview 1 RT 1: 11525-18429 bp Neighborhood of RT #1 [11525, 18440] HipA_So_like RVT-UG8 NERD zf-C4_Topoisom COG3177 Feature: gene Location: 11525-11761 bp Feature: gene Location: 11782-12099 bp Feature: domain Description: HipA_So_like Location: 11821-12061 bp Feature: domain Description: HipA_So_like Location: 11821-12061 bp Feature: gene Location: 13051-15021 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 13582-14023 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 135 82-14023 bp Feature: gene Location: 16372-17148 bp Feature: domain Description: NERD Location: 16471-16804 bp Feature: domain Description: NERD Location: 16471-16804 bp Feature: domain Description: zf-C4_Topoisom Location: 17023-17140 bp Feature: domain Description: zf-C4_Topoisom Location: 17023-17140 bp Feature: gene Location: 17319-18440 bp Feature: domain Description: COG3177 Location: 17337-18429 bp Feature: domain Description: COG3177 Location: 17337-18429 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipA_So_like (cd17809), RVT-UG8, NERD (pfam08378), zf-C4_Topoisom (pfam01396), COG3177 (Fic family protein )