myRT

myRT report for GCA_001068295.1_ASM106829v1

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Seq: JUMB01000064.1 Pseudomonas aeruginosa strain 957_PAER 132_1861_48594, whole genome shotgun sequence (1861 bp)
Overview 1 RT 1: 65-1860 bp Neighborhood of RT #1 [65, 1860] RVT-GII GIIM Feature: gene Location: 65-1333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 278-935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 278-935 bp Feature: domain Description: GIIM Note: maturase Location: 1013-1235 bp Feature: domain Description: GIIM Note: maturase Location: 1 01 3-1 235 bp Feature: gene Location: 1684-1860 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JUMB01000105.1 Pseudomonas aeruginosa strain 957_PAER 220_47365_665054, whole genome shotgun sequence (47365 bp)
Overview 1 RT 1: 10977-21283 bp Neighborhood of RT #1 [10977, 21285] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 10977-12098 bp Feature: domain Description: COG3177 Location: 10995-12087 bp Feature: domain Description: COG3177 Location: 10995-12 087 bp Feature: gene Location: 12357-12494 bp Feature: gene Location: 12822-14507 bp Feature: RT Description: RVT_N Location: 12879-13119 bp Feature: RT Description: RVT_N Location: 12 879-13119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13167-13803 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13167-13803 bp Feature: domain Description: GIIM Note: maturase Location: 13857-14088 bp Feature: domain Description: GIIM Note: maturase Location: 13857-14088 bp Feature: domain Description: HNH Note: nucleases Location: 14340-14478 bp Feature: domain Description: HNH Note: nucleases Location: 14340-14478 bp Feature: gene Location: 15588-19325 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 15696-16353 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 15696-16353 bp Feature: domain Description: PRK09776 Location: 16566-17037 bp Feature: domain Description: PRK09776 Location: 16566-17037 bp Feature: domain Description: PAS Location: 17094-17619 bp Feature: domain Description: PAS Location: 17094-17619 bp Feature: domain Description: PRK10060 Location: 17628-19275 bp Feature: domain Description: PRK10060 Location: 1762 8-192 75 bp Feature: gene Location: 19432-21285 bp Feature: domain Description: PRK05658 Location: 19444-21283 bp Feature: domain Description: PRK05658 Location: 19444-2 12 83 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)