myRT

myRT report for GCA_001069315.1_ASM106931v1

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Seq: JWBE01000171.1 Pseudomonas aeruginosa strain 1152_PAER 1277_379492_8679845_633+,...,1198+, whole genome shotgun sequence (379492 bp)
Overview 1 RT 1: 292211-302517 bp Neighborhood of RT #1 [292211, 302519] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 292211-293332 bp Feature: domain Description: COG3177 Location: 292229-293321 bp Feature: domain Description: COG31 77 Location: 292229-293321 bp Feature: gene Location: 293591-293728 bp Feature: gene Location: 294056-295741 bp Feature: domain Description: RVT_N Location: 294113-294353 bp Feature: domain Description: RVT_N Location: 2941 1 3-294353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294401-295037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294401 -295037 bp Feature: domain Description: GIIM Note: maturase Location: 295091-295322 bp Feature: domain Description: GIIM Note: maturase Location: 295091 -295322 bp Feature: domain Description: HNH Note: nucleases Location: 295574-295712 bp Feature: domain Description: HNH Note: nucleases Location: 295574-29571 2 bp Feature: gene Location: 296822-300559 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 296930-297587 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 296930-297587 bp Feature: domain Description: PRK09776 Location: 297800-298271 bp Feature: domain Description: PRK09776 Location: 297800-298271 bp Feature: domain Description: PAS Location: 298328-298853 bp Feature: domain Description: PAS Location: 298328-298853 bp Feature: domain Description: PRK10060 Location: 298862-300509 bp Feature: domain Description: PRK1 0060 Location: 298862-300509 bp Feature: gene Location: 300666-302519 bp Feature: domain Description: PRK05658 Location: 300678-302517 bp Feature: domain Description: PRK05658 Location: 300678-30251 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)

Seq: JWBE01000181.1 Pseudomonas aeruginosa strain 1152_PAER 1287_97224_2269721_731_,...,1055_, whole genome shotgun sequence (97224 bp)
Overview 1 RT 1: 42610-48581 bp Neighborhood of RT #1 [42610, 48586] PRK00024 RVT_N RVT-GII GIIM HNHc PRK05579 dut Feature: gene Location: 42610-43158 bp Feature: gene Location: 43175-43849 bp Feature: domain Description: PRK00024 Location: 43178-43847 bp Feature: domain Description: PRK0002 4 Location: 43178-43847 bp Feature: gene Location: 45021-46703 bp Feature: domain Description: RVT_N Location: 45030-45273 bp Feature: domain Description: RVT_N Location: 45030-452 73 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45321-45972 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4532 1-45972 bp Feature: domain Description: GIIM Note: maturase Location: 46050-46278 bp Feature: domain Description: GIIM Note: maturase Location: 46050-462 78 bp Feature: domain Description: HNHc Note: nucleases Location: 46506-46662 bp Feature: domain Description: HNHc Note: nucleases Location: 46506-46662 bp Feature: gene Location: 46915-48123 bp Feature: domain Description: PRK05579 Location: 46921-48115 bp Feature: domain Description: PRK05579 Location: 4692 1-48115 bp Feature: gene Location: 48131-48586 bp Feature: domain Description: dut Location: 48137-48581 bp Feature: domain Description: dut Location: 48137-48581 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00024 (DNA repair protein RadC), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK05579 (bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated), dut (TIGR00576)

Seq: JWBE01000184.1 Pseudomonas aeruginosa strain 1152_PAER 1290_70017_1372259_767_,466+,70+, whole genome shotgun sequence (70017 bp)
Overview 1 RT 1: 64161-69702 bp Neighborhood of RT #1 [64161, 69998] CHD CHD RVT-GII GIIM DUF772 Feature: gene Location: 64161-65705 bp Feature: domain Description: CHD Location: 64377-64791 bp Feature: domain Description: CHD Location: 643 77-64791 bp Feature: domain Description: CHD Location: 65019-65508 bp Feature: domain Description: CHD Location: 65019-65508 bp Feature: gene Location: 66789-66968 bp Feature: gene Location: 67700-68968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67913-68570 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67913 -68570 bp Feature: domain Description: GIIM Note: maturase Location: 68648-68870 bp Feature: domain Description: GIIM Note: maturase Location: 68648-68870 bp Feature: gene Location: 69357-69998 bp Feature: domain Description: DUF772 Location: 69507-69702 bp Feature: domain Description: DUF772 Location: 69507-69702 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598)

Seq: JWBE01000084.1 Pseudomonas aeruginosa strain 1152_PAER 893_38272_557496, whole genome shotgun sequence (38272 bp)
Overview 1 RT 1: 1727-8913 bp Neighborhood of RT #1 [1727, 9077] STN TonB-siderophor YHI9 RVT-UG2 PRK06333 HxlR Feature: gene Location: 1727-4168 bp Feature: domain Description: STN Location: 1886-2039 bp Feature: domain Description: STN Location: 1886-2039 bp Feature: domain Description: TonB-siderophor Location: 2147-4106 bp Feature: domain Description: TonB-siderophor Location: 214 7-4 106 bp Feature: gene Location: 4329-5165 bp Feature: domain Description: YHI9 Location: 4341-5157 bp Feature: domain Description: YHI9 Location: 4 34 1-5157 bp Feature: gene Location: 5349-6695 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 5598-6384 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 5598-6384 bp Feature: gene Location: 7194-8462 bp Feature: domain Description: PRK06333 Location: 7200-8457 bp Feature: domain Description: PRK06333 Location: 7200-84 57 bp Feature: gene Location: 8571-9077 bp Feature: domain Description: HxlR Location: 8595-8913 bp Feature: domain Description: HxlR Location: 8595-8913 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT STN (smart00965), TonB-siderophor (TIGR01783), YHI9 (COG0384), RVT-UG2, PRK06333 (beta-ketoacyl-ACP synthase), HxlR (pfam01638)