myRT

myRT report for GCA_001070935.1_ASM107093v1

Download annotations/find similar RTs

Seq: JVKH01000006.1 Streptococcus agalactiae strain 357_SAGA 308_67999_2775650_16+,20+, whole genome shotgun sequence (67999 bp)
Overview 1 RT 1: 486-3328 bp Neighborhood of RT #1 [486, 3555] RVT-GII GIIM PolyPPase_VTC_like DUF4956 Feature: gene Location: 486-1763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 690-1305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 690-1 305 bp Feature: domain Description: GIIM Note: maturase Location: 1359-1575 bp Feature: domain Description: GIIM Note: maturase Location: 1 359-1 575 bp Feature: gene Location: 2215-2826 bp Feature: domain Description: PolyPPase_VTC_like Location: 2218-2791 bp Feature: domain Description: PolyPPase_VTC_like Location: 221 8-2791 bp Feature: gene Location: 2878-3555 bp Feature: domain Description: DUF4956 Location: 2965-3328 bp Feature: domain Description: DUF4956 Location: 2965-3328 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PolyPPase_VTC_like (cd07750), DUF4956 (pfam16316), RVT-GII, GIIM (pfam08388)

Seq: JVKH01000007.1 Streptococcus agalactiae strain 357_SAGA 309_27183_2590163_16+,...,16+, whole genome shotgun sequence (27183 bp)
Overview 1 RT 1: 221-3541 bp 2 RT 2: 25308-26929 bp Neighborhood of RT #1 [221, 3543] RVT-GII GIIM YcgQ YraQ Neighborhood of RT #2 [25308, 27117] RVT-GII GIIM Feature: gene Location: 221-382 bp Feature: gene Location: 453-1763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 690-1305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 690-1305 bp Feature: domain Description: GIIM Note: maturase Location: 1359-1575 bp Feature: domain Description: GIIM Note: maturase Location: 1359-1575 bp Feature: gene Location: 1829-2641 bp Feature: domain Description: YcgQ Location: 1832-2639 bp Feature: domain Description: YcgQ Location: 1832 -2 639 bp Feature: gene Location: 2641-3543 bp Feature: domain Description: YraQ Location: 2644-3541 bp Feature: domain Description: YraQ Location: 2 644-3541 bp Feature: gene Location: 25308-25475 bp Feature: gene Location: 25575-25736 bp Feature: gene Location: 25807-27117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26044-26659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6044-2 6659 bp Feature: domain Description: GIIM Note: maturase Location: 26713-26929 bp Feature: domain Description: GIIM Note: maturase Location: 2 6713-2 692 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YcgQ (COG3689), YraQ (COG0701), RVT-GII, GIIM (pfam08388)

Seq: JVKH01000008.1 Streptococcus agalactiae strain 357_SAGA 310_44253_2229260_16+,138+, whole genome shotgun sequence (44253 bp)
Overview 1 RT 1: 221-3250 bp Neighborhood of RT #1 [221, 3273] RVT-GII GIIM PRK08295 PhoE Feature: gene Location: 221-382 bp Feature: gene Location: 453-1763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 690-1305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 690-13 05 bp Feature: domain Description: GIIM Note: maturase Location: 1359-1575 bp Feature: domain Description: GIIM Note: maturase Location: 13 59-1575 bp Feature: gene Location: 1979-2458 bp Feature: domain Description: PRK08295 Location: 1991-2219 bp Feature: domain Description: PRK08295 Location: 1991-2219 bp Feature: gene Location: 2581-3273 bp Feature: domain Description: PhoE Location: 2590-3250 bp Feature: domain Description: PhoE Location: 2590-3 250 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK08295 (RNA polymerase sporulation sigma factor SigH), PhoE (COG0406), RVT-GII, GIIM (pfam08388)

Seq: JVKH01000009.1 Streptococcus agalactiae strain 357_SAGA 311_8807_1913370_16+,...,84_, whole genome shotgun sequence (8807 bp)
Overview 1 RT 1: 221-3952 bp Neighborhood of RT #1 [221, 3957] RVT-GII GIIM COG3442 MurE Feature: gene Location: 221-382 bp Feature: gene Location: 453-1763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 690-1305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 690-1305 bp Feature: domain Description: GIIM Note: maturase Location: 1359-1575 bp Feature: domain Description: GIIM Note: maturase Location: 1359-1575 bp Feature: gene Location: 1829-2500 bp Feature: domain Description: COG3442 Location: 1832-2489 bp Feature: domain Description: COG34 4 2 Location: 1832-24 89 bp Feature: gene Location: 2614-3957 bp Feature: domain Description: MurE Location: 2647-3952 bp Feature: domain Description: MurE Location: 264 7-3952 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3442 (Glutamine amidotransferase related to the GATase domain of CobQ ), MurE (COG0769), RVT-GII, GIIM (pfam08388)

Seq: JVKH01000010.1 Streptococcus agalactiae strain 357_SAGA 312_11796_1462081_16+,158+,91_, whole genome shotgun sequence (11796 bp)
Overview 1 RT 1: 221-3850 bp Neighborhood of RT #1 [221, 3858] RVT-GII GIIM BaeS OmpR Feature: gene Location: 221-382 bp Feature: gene Location: 453-1763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 690-1305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 690-1305 bp Feature: domain Description: GIIM Note: maturase Location: 1359-1575 bp Feature: domain Description: GIIM Note: maturase Location: 135 9-15 75 bp Feature: gene Location: 1839-3203 bp Feature: domain Description: BaeS Location: 2178-3192 bp Feature: domain Description: BaeS Location: 2178-3192 bp Feature: gene Location: 3187-3858 bp Feature: domain Description: OmpR Location: 3190-3850 bp Feature: domain Description: OmpR Location: 3190-385 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BaeS (COG0642), OmpR (COG0745), RVT-GII, GIIM (pfam08388)

Seq: JVKH01000011.1 Streptococcus agalactiae strain 357_SAGA 313_18293_1407732_16_,...,60+, whole genome shotgun sequence (18293 bp)
Overview 1 RT 1: 67-3405 bp Neighborhood of RT #1 [67, 3470] RVT-GII GIIM BetT Feature: gene Location: 67-1344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271-886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271-886 bp Feature: domain Description: GIIM Note: maturase Location: 940-1156 bp Feature: domain Description: GIIM Note: maturase Location: 940-1156 bp Feature: gene Location: 1709-1876 bp Feature: gene Location: 1923-3470 bp Feature: domain Description: BetT Location: 1935-3405 bp Feature: domain Description: BetT Location: 1935-3405 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BetT (COG1292), RVT-GII, GIIM (pfam08388)

Seq: JVKH01000012.1 Streptococcus agalactiae strain 357_SAGA 314_6536_1096670_16_,85_,176+, whole genome shotgun sequence (6536 bp)
Overview 1 RT 1: 67-5500 bp Neighborhood of RT #1 [67, 5505] RVT-GII GIIM Branch_AA_trans PRK12267 Feature: gene Location: 67-1377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 304-919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 304-919 bp Feature: domain Description: GIIM Note: maturase Location: 973-1189 bp Feature: domain Description: GIIM Note: maturase Location: 97 3-1189 bp Feature: gene Location: 1920-3125 bp Feature: domain Description: Branch_AA_trans Location: 1926-3081 bp Feature: domain Description: Branch_AA_trans Location: 1926-3081 bp Feature: gene Location: 3457-5505 bp Feature: domain Description: PRK12267 Location: 3517-5500 bp Feature: domain Description: PRK12267 Location: 3517 -5500 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Branch_AA_trans (pfam05525), PRK12267 (methionyl-tRNA synthetase; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: JVKH01000013.1 Streptococcus agalactiae strain 357_SAGA 315_15208_2422706_16_,...,132+, whole genome shotgun sequence (15208 bp)
Overview 1 RT 1: 67-3274 bp Neighborhood of RT #1 [67, 3591] RVT-GII GIIM YSIRK_signal SSURE SSURE Feature: gene Location: 67-1377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 304-919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 304-919 bp Feature: domain Description: GIIM Note: maturase Location: 973-1189 bp Feature: domain Description: GIIM Note: maturase Location: 973-118 9 bp Feature: gene Location: 1709-1888 bp Feature: gene Location: 2026-3591 bp Feature: domain Description: YSIRK_signal Location: 2041-2131 bp Feature: domain Description: YSIRK_signal Location: 2041-2131 bp Feature: domain Description: SSURE Location: 2584-2821 bp Feature: domain Description: SSURE Location: 258 4-28 21 bp Feature: domain Description: SSURE Location: 3034-3274 bp Feature: domain Description: SSURE Location: 3034-3274 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YSIRK_signal (TIGR01168), SSURE (pfam11966), RVT-GII, GIIM (pfam08388)

Seq: JVKH01000016.1 Streptococcus agalactiae strain 357_SAGA 318_15883_2102761_84+,...,16_, whole genome shotgun sequence (15883 bp)
Overview 1 RT 1: 10210-15243 bp Neighborhood of RT #1 [10210, 15431] PRK05764 PRK07246 RVT-GII GIIM Feature: gene Location: 10210-11403 bp Feature: domain Description: PRK05764 Location: 10216-11389 bp Feature: domain Description: PRK05764 Location: 10216-11389 bp Feature: gene Location: 11489-13954 bp Feature: domain Description: PRK07246 Location: 11492-13952 bp Feature: domain Description: PRK07246 Location: 1149 2-139 52 bp Feature: gene Location: 14121-15431 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14358-14973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14358-149 73 bp Feature: domain Description: GIIM Note: maturase Location: 15027-15243 bp Feature: domain Description: GIIM Note: maturase Location: 15027-15243 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05764 (aspartate aminotransferase; Provisional), PRK07246 (bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated), RVT-GII, GIIM (pfam08388)

Seq: JVKH01000019.1 Streptococcus agalactiae strain 357_SAGA 322_43326_2948521_84+,...,16+, whole genome shotgun sequence (43326 bp)
Overview 1 RT 1: 38797-43072 bp Neighborhood of RT #1 [38797, 43260] PRK12353 YfcC RVT-GII GIIM Feature: gene Location: 38797-39723 bp Feature: domain Description: PRK12353 Location: 38803-39721 bp Feature: domain Description: PRK12353 Location: 38803-39721 bp Feature: gene Location: 39817-41370 bp Feature: domain Description: YfcC Location: 39844-41365 bp Feature: domain Description: YfcC Location: 39844-41365 bp Feature: gene Location: 41950-43260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42187-42802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42187-42802 bp Feature: domain Description: GIIM Note: maturase Location: 42856-43072 bp Feature: domain Description: GIIM Note: maturase Location: 42856-43072 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12353 (putative amino acid kinase; Reviewed), YfcC (COG1288), RVT-GII, GIIM (pfam08388)

Seq: JVKH01000022.1 Streptococcus agalactiae strain 357_SAGA 325_29940_2470108_84+,...,16+, whole genome shotgun sequence (29940 bp)
Overview 1 RT 1: 27593-29686 bp Neighborhood of RT #1 [27593, 29874] VOC_Bs_YwkD_like RVT-GII GIIM Feature: gene Location: 27593-28006 bp Feature: domain Description: VOC_Bs_YwkD_like Location: 27608-28004 bp Feature: domain Description: VOC_Bs_YwkD_like Location: 27608-28004 bp Feature: gene Location: 28065-28232 bp Feature: gene Location: 28564-29874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28801-29416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28801-29416 bp Feature: domain Description: GIIM Note: maturase Location: 29470-29686 bp Feature: domain Description: GIIM Note: maturase Location: 29470-29686 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VOC_Bs_YwkD_like (cd08352), RVT-GII, GIIM (pfam08388)

Seq: JVKH01000030.1 Streptococcus agalactiae strain 357_SAGA 333_17230_1614672_91_,115+,16_, whole genome shotgun sequence (17230 bp)
Overview 1 RT 1: 13877-16590 bp Neighborhood of RT #1 [13877, 16778] GlnQ HisM RVT-GII GIIM Feature: gene Location: 13877-14611 bp Feature: domain Description: GlnQ Location: 13892-14606 bp Feature: domain Description: GlnQ Location: 13892-14606 bp Feature: gene Location: 14604-15302 bp Feature: domain Description: HisM Location: 14616-15279 bp Feature: domain Description: HisM Location: 14616-15279 bp Feature: gene Location: 15468-16778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15705-16320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15705-16320 bp Feature: domain Description: GIIM Note: maturase Location: 16374-16590 bp Feature: domain Description: GIIM Note: maturase Location: 16374-16590 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnQ (COG1126), HisM (COG0765), RVT-GII, GIIM (pfam08388)

Seq: JVKH01000031.1 Streptococcus agalactiae strain 357_SAGA 334_14268_1504963_91_,...,16+, whole genome shotgun sequence (14268 bp)
Overview 1 RT 1: 12393-14014 bp Neighborhood of RT #1 [12393, 14202] RVT-GII GIIM Feature: gene Location: 12393-12560 bp Feature: gene Location: 12660-12821 bp Feature: gene Location: 12892-14202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13129-13744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 129-13 744 bp Feature: domain Description: GIIM Note: maturase Location: 13798-14014 bp Feature: domain Description: GIIM Note: maturase Location: 13 798-14014 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JVKH01000032.1 Streptococcus agalactiae strain 357_SAGA 335_5863_1098002_94+,85+,16+, whole genome shotgun sequence (5863 bp)
Overview 1 RT 1: 2766-5609 bp Neighborhood of RT #1 [2766, 5797] NTP_transf_6 DUF2992 RVT-GII GIIM Feature: gene Location: 2766-3317 bp Feature: domain Description: NTP_transf_6 Location: 2826-3306 bp Feature: domain Description: NTP_transf_6 Location: 2826-3306 bp Feature: gene Location: 3537-3956 bp Feature: domain Description: DUF2992 Location: 3546-3954 bp Feature: domain Description: DUF2992 Location: 3546-3954 bp Feature: gene Location: 4520-5797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4724-5339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4724-5339 bp Feature: domain Description: GIIM Note: maturase Location: 5393-5609 bp Feature: domain Description: GIIM Note: maturase Location: 5393-5609 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transf_6 (pfam06042), DUF2992 (pfam11208), RVT-GII, GIIM (pfam08388)

Seq: JVKH01000033.1 Streptococcus agalactiae strain 357_SAGA 336_32264_1849317_102+,16_, whole genome shotgun sequence (32264 bp)
Overview 1 RT 1: 29450-31591 bp Neighborhood of RT #1 [29450, 31779] YccU Fur RVT-GII GIIM Feature: gene Location: 29450-29890 bp Feature: domain Description: YccU Location: 29471-29876 bp Feature: domain Description: YccU Location: 29471-29876 bp Feature: gene Location: 29972-30445 bp Feature: domain Description: Fur Location: 30017-30428 bp Feature: domain Description: Fur Location: 30017-30428 bp Feature: gene Location: 30502-31779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30706-31321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30706-31321 bp Feature: domain Description: GIIM Note: maturase Location: 31375-31591 bp Feature: domain Description: GIIM Note: maturase Location: 31375-315 91 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YccU (COG1832), Fur (COG0735), RVT-GII, GIIM (pfam08388)

Seq: JVKH01000034.1 Streptococcus agalactiae strain 357_SAGA 337_32355_1926969_104+,...,16+, whole genome shotgun sequence (32355 bp)
Overview 1 RT 1: 30477-32101 bp Neighborhood of RT #1 [30477, 32289] RVT-GII GIIM Feature: gene Location: 30477-30647 bp Feature: gene Location: 30747-30908 bp Feature: gene Location: 30979-32289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31216-31831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31216 -31831 bp Feature: domain Description: GIIM Note: maturase Location: 31885-32101 bp Feature: domain Description: GIIM Note: maturase Location: 31885-32101 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JVKH01000042.1 Streptococcus agalactiae strain 357_SAGA 345_104685_4083996_123_,...,16+, whole genome shotgun sequence (104685 bp)
Overview 1 RT 1: 100937-104431 bp Neighborhood of RT #1 [100937, 104619] Glyco_hydro_3 RVT-GII GIIM Feature: gene Location: 100937-102727 bp Feature: domain Description: Glyco_hydro_3 Location: 101027-101984 bp Feature: domain Description: Glyco_hydro_3 Location: 101027-101984 bp Feature: gene Location: 102810-102977 bp Feature: gene Location: 103342-104619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103546-104161 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103546-104161 bp Feature: domain Description: GIIM Note: maturase Location: 104215-104431 bp Feature: domain Description: GIIM Note: maturase Location: 104215-104431 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glyco_hydro_3 (pfam00933), RVT-GII, GIIM (pfam08388)

Seq: JVKH01000052.1 Streptococcus agalactiae strain 357_SAGA 355_7729_2208285_132_,...,16+, whole genome shotgun sequence (7729 bp)
Overview 1 RT 1: 5854-7475 bp Neighborhood of RT #1 [5854, 7663] RVT-GII GIIM Feature: gene Location: 5854-6021 bp Feature: gene Location: 6121-6282 bp Feature: gene Location: 6353-7663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6590-7205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6590-7205 bp Feature: domain Description: GIIM Note: maturase Location: 7259-7475 bp Feature: domain Description: GIIM Note: maturase Location: 7259-7475 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JVKH01000057.1 Streptococcus agalactiae strain 357_SAGA 360_21847_2565574_132_,...,16+, whole genome shotgun sequence (21847 bp)
Overview 1 RT 1: 19930-21593 bp Neighborhood of RT #1 [19930, 21781] RVT-GII GIIM Feature: gene Location: 19930-20139 bp Feature: gene Location: 20239-20400 bp Feature: gene Location: 20471-21781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20708-21323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20708-21323 bp Feature: domain Description: GIIM Note: maturase Location: 21377-21593 bp Feature: domain Description: GIIM Note: maturase Location: 21377-21593 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JVKH01000070.1 Streptococcus agalactiae strain 357_SAGA 373_9724_1199904_232_,...,16+, whole genome shotgun sequence (9724 bp)
Overview 1 RT 1: 7849-9470 bp Neighborhood of RT #1 [7849, 9658] RVT-GII GIIM Feature: gene Location: 7849-8016 bp Feature: gene Location: 8116-8277 bp Feature: gene Location: 8348-9658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8585-9200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8585-920 0 bp Feature: domain Description: GIIM Note: maturase Location: 9254-9470 bp Feature: domain Description: GIIM Note: maturase Location: 9254-9470 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JVKH01000078.1 Streptococcus agalactiae strain 357_SAGA 382_52331_2448949_280_,...,16+, whole genome shotgun sequence (52331 bp)
Overview 1 RT 1: 50208-52077 bp Neighborhood of RT #1 [50208, 52265] YkuJ RVT-GII GIIM Feature: gene Location: 50208-50438 bp Feature: domain Description: YkuJ Location: 50214-50436 bp Feature: domain Description: YkuJ Location: 5021 4-50436 bp Feature: gene Location: 50723-50884 bp Feature: gene Location: 50955-52265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51192-51807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51192-51807 bp Feature: domain Description: GIIM Note: maturase Location: 51861-52077 bp Feature: domain Description: GIIM Note: maturase Location: 51861-52077 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YkuJ (COG4703), RVT-GII, GIIM (pfam08388)