myRT

myRT report for GCA_001071255.1_ASM107125v1

Download annotations/find similar RTs

Seq: JVDJ01000323.1 Burkholderia cenocepacia strain 531_BMUL 4655_2652_68341_828+,...,2170+, whole genome shotgun sequence (2652 bp)
Overview 1 RT 1: 3-2405 bp Neighborhood of RT #1 [3, 2590] COG3547 RVT-GII GIIM Feature: gene Location: 3-1028 bp Feature: domain Description: COG3547 Location: 18-981 bp Feature: domain Description: COG3547 Location: 1 8-981 bp Feature: gene Location: 1193-2590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1526-2144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 526-21 44 bp Feature: domain Description: GIIM Note: maturase Location: 2195-2405 bp Feature: domain Description: GIIM Note: maturase Location: 21 95-2405 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: JVDJ01000372.1 Burkholderia cenocepacia strain 531_BMUL 4706_3216_39400_1291+,2170_, whole genome shotgun sequence (3216 bp)
Overview 1 RT 1: 1200-3030 bp Neighborhood of RT #1 [1200, 3215] DHFR_1 RVT-GII GIIM Feature: gene Location: 1200-1499 bp Feature: gene Location: 1790-2290 bp Feature: domain Description: DHFR_1 Location: 1802-2279 bp Feature: domain Description: DHFR_1 Location: 1802 -2 2 79 bp Feature: gene Location: 2376-3215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2379-2769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 379-2 769 bp Feature: domain Description: GIIM Note: maturase Location: 2820-3030 bp Feature: domain Description: GIIM Note: maturase Location: 2 82 0-3030 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DHFR_1 (pfam00186), RVT-GII, GIIM (pfam08388)

Seq: JVDJ01000445.1 Burkholderia cenocepacia strain 531_BMUL 4783_1774_42762_1905+,828_, whole genome shotgun sequence (1774 bp)
Overview 1 RT 1: 1-1725 bp Neighborhood of RT #1 [1, 1772] RVT-GII COG3547 Feature: gene Location: 1-576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334-577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 4-577 bp Feature: gene Location: 747-1772 bp Feature: domain Description: COG3547 Location: 762-1725 bp Feature: domain Description: COG3 547 Location: 762-1725 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG3547 (Transposase )

Seq: JVDJ01000483.1 Burkholderia cenocepacia strain 531_BMUL 4823_2979_38974_2170+,...,2596+, whole genome shotgun sequence (2979 bp)
Overview 1 RT 1: 2-2830 bp Neighborhood of RT #1 [2, 2835] RVT-GII GIIM RutF PRK09121 Feature: gene Location: 2-841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-395 bp Feature: domain Description: GIIM Note: maturase Location: 446-656 bp Feature: domain Description: GIIM Note: maturase Location: 4 4 6-656 bp Feature: gene Location: 1178-1726 bp Feature: domain Description: RutF Location: 1244-1706 bp Feature: domain Description: RutF Location: 124 4 -1706 bp Feature: gene Location: 1828-2835 bp Feature: domain Description: PRK09121 Location: 1840-2830 bp Feature: domain Description: PRK09121 Location: 184 0-2830 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RutF (TIGR03615), PRK09121 (methionine synthase), RVT-GII, GIIM (pfam08388)

Seq: JVDJ01000645.1 Burkholderia cenocepacia strain 531_BMUL 4990_15649_140059_3872_,4293_,951+, whole genome shotgun sequence (15649 bp)
Overview 1 RT 1: 1-3909 bp Neighborhood of RT #1 [1, 3914] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 1-261 bp Feature: domain Description: Histone_HNS Location: 22-259 bp Feature: domain Description: Histone_HNS Location: 22-25 9 bp Feature: gene Location: 587-2047 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1163-1799 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1163-1799 bp Feature: gene Location: 2190-2762 bp Feature: domain Description: FIN Location: 2370-2727 bp Feature: domain Description: FIN Location: 2370-2727 bp Feature: gene Location: 2997-3914 bp Feature: domain Description: his_ut_repres Location: 3237-3909 bp Feature: domain Description: his_ut_repres Location: 3237-3909 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), FIN (cd16389), his_ut_repres (TIGR02018), RVT-Retrons

Seq: JVDJ01000690.1 Burkholderia cenocepacia strain 531_BMUL 5037_13069_145764_4115+,1937+,2169_, whole genome shotgun sequence (13069 bp)
Overview 1 RT 1: 10141-12910 bp Neighborhood of RT #1 [10141, 13068] Gmd GDP_MD_SDR_e RVT-GII GIIM Feature: gene Location: 10141-11187 bp Feature: domain Description: Gmd Location: 10156-11173 bp Feature: domain Description: Gmd Location: 10156 -11173 bp Feature: gene Location: 11249-12139 bp Feature: domain Description: GDP_MD_SDR_e Location: 11252-12107 bp Feature: domain Description: GDP_MD_SDR_e Location: 11252-12107 bp Feature: gene Location: 12259-13068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12262-12649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1226 2-126 49 bp Feature: domain Description: GIIM Note: maturase Location: 12709-12910 bp Feature: domain Description: GIIM Note: maturase Location: 12709-12910 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gmd (COG1089), GDP_MD_SDR_e (cd05260), RVT-GII, GIIM (pfam08388)