myRT

myRT report for GCA_001071265.1_ASM107126v1

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Seq: JVDN01001019.1 Burkholderia cenocepacia strain 528_BCEN 6184_2958_54214_1204+,...,2850+, whole genome shotgun sequence (2958 bp)
Overview 1 RT 1: 300-2711 bp Neighborhood of RT #1 [300, 2896] COG3547 RVT-GII GIIM Feature: gene Location: 300-1334 bp Feature: domain Description: COG3547 Location: 315-1278 bp Feature: domain Description: COG3547 Location: 31 5-1 278 bp Feature: gene Location: 1499-2896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1832-2450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 832-2450 bp Feature: domain Description: GIIM Note: maturase Location: 2501-2711 bp Feature: domain Description: GIIM Note: maturase Location: 2501 -271 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: JVDN01001083.1 Burkholderia cenocepacia strain 528_BCEN 6248_6178_100632_1577_,...,2850_, whole genome shotgun sequence (6178 bp)
Overview 1 RT 1: 3323-5992 bp Neighborhood of RT #1 [3323, 6177] PRK09121 RutF RVT-GII GIIM Feature: gene Location: 3323-4351 bp Feature: domain Description: PRK09121 Location: 3335-4346 bp Feature: domain Description: PRK0912 1 Location: 3335-4346 bp Feature: gene Location: 4453-5001 bp Feature: domain Description: RutF Location: 4519-4981 bp Feature: domain Description: RutF Location: 4519-4981 bp Feature: gene Location: 5338-6177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5341-5731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5341-5731 bp Feature: domain Description: GIIM Note: maturase Location: 5782-5992 bp Feature: domain Description: GIIM Note: maturase Location: 5782 -5992 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09121 (methionine synthase), RutF (TIGR03615), RVT-GII, GIIM (pfam08388)

Seq: JVDN01001110.1 Burkholderia cenocepacia strain 528_BCEN 6275_3216_31150_1742+,2850_, whole genome shotgun sequence (3216 bp)
Overview 1 RT 1: 1200-3030 bp Neighborhood of RT #1 [1200, 3215] DHFR_1 RVT-GII GIIM Feature: gene Location: 1200-1499 bp Feature: gene Location: 1790-2290 bp Feature: domain Description: DHFR_1 Location: 1802-2279 bp Feature: domain Description: DHFR_1 Location: 1802-2279 bp Feature: gene Location: 2376-3215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2379-2769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 79-2769 bp Feature: domain Description: GIIM Note: maturase Location: 2820-3030 bp Feature: domain Description: GIIM Note: maturase Location: 2820-3 03 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DHFR_1 (pfam00186), RVT-GII, GIIM (pfam08388)

Seq: JVDN01001210.1 Burkholderia cenocepacia strain 528_BCEN 6376_37222_325773_2389+,...,361+, whole genome shotgun sequence (37295 bp)
Overview 1 RT 1: 854-6377 bp Neighborhood of RT #1 [854, 6382] MFS_MucK Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 854-2089 bp Feature: domain Description: MFS_MucK Location: 932-2066 bp Feature: domain Description: MFS_MucK Location: 932-2066 bp Feature: gene Location: 2400-2729 bp Feature: domain Description: Histone_HNS Location: 2421-2658 bp Feature: domain Description: Histone_HNS Location: 24 21-2658 bp Feature: gene Location: 3055-4515 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3631-4267 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3631-4 267 bp Feature: gene Location: 4658-5230 bp Feature: domain Description: FIN Location: 4838-5195 bp Feature: domain Description: FIN Location: 4 838-5195 bp Feature: gene Location: 5465-6382 bp Feature: domain Description: his_ut_repres Location: 5705-6377 bp Feature: domain Description: his_ut_repres Location: 5705-6377 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018), MFS_MucK (cd17371)

Seq: JVDN01001255.1 Burkholderia cenocepacia strain 528_BCEN 6421_3214_27107_2851_,972_,2506+, whole genome shotgun sequence (3214 bp)
Overview 1 RT 1: 1-2872 bp Neighborhood of RT #1 [1, 3030] Gmd GDP_MD_SDR_e RVT-GII GIIM Feature: gene Location: 1-669 bp Feature: domain Description: Gmd Location: 4-655 bp Feature: domain Description: Gmd Location: 4-65 5 bp Feature: gene Location: 731-1621 bp Feature: domain Description: GDP_MD_SDR_e Location: 734-1589 bp Feature: domain Description: GDP_MD_SDR_e Location: 734-15 89 bp Feature: gene Location: 1741-3030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1996-2611 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1996-2611 bp Feature: domain Description: GIIM Note: maturase Location: 2671-2872 bp Feature: domain Description: GIIM Note: maturase Location: 2671-2872 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gmd (COG1089), RVT-GII, GIIM (pfam08388), GDP_MD_SDR_e (cd05260)