myRT

myRT report for GCA_001072455.1_ASM107245v1

Download annotations/find similar RTs

Seq: JVKO01000168.1 Burkholderia cenocepacia strain 35_BMUL 2175_14635_190318_55+,...,1922+, whole genome shotgun sequence (14635 bp)
Overview 1 RT 1: 9942-14576 bp Neighborhood of RT #1 [9942, 14632] Gmd GDP_MD_SDR_e RVT-GII GIIM COG3547 Feature: gene Location: 9942-10988 bp Feature: domain Description: Gmd Location: 9957-10974 bp Feature: domain Description: Gmd Location: 9957-1 0974 bp Feature: gene Location: 11050-11940 bp Feature: domain Description: GDP_MD_SDR_e Location: 11053-11908 bp Feature: domain Description: GDP_MD_SDR_e Location: 1 1 053-1 1 908 bp Feature: gene Location: 12060-13349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12315-12930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 231 5-1 2930 bp Feature: domain Description: GIIM Note: maturase Location: 12990-13191 bp Feature: domain Description: GIIM Note: maturase Location: 1 2990-1 31 91 bp Feature: gene Location: 13598-14632 bp Feature: domain Description: COG3547 Location: 13613-14576 bp Feature: domain Description: COG3547 Location: 1 361 3-1 4576 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDP_MD_SDR_e (cd05260), RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), Gmd (COG1089)

Seq: JVKO01000288.1 Burkholderia cenocepacia strain 35_BMUL 2295_15420_161396_890_,...,1082+, whole genome shotgun sequence (15420 bp)
Overview 1 RT 1: 3-2027 bp Neighborhood of RT #1 [3, 2027] RVT-GII GIIM DHFR_1 Feature: gene Location: 3-851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-405 bp Feature: domain Description: GIIM Note: maturase Location: 456-666 bp Feature: domain Description: GIIM Note: maturase Location: 456-666 bp Feature: gene Location: 937-1437 bp Feature: domain Description: DHFR_1 Location: 949-1426 bp Feature: domain Description: DHFR_1 Location: 949-142 6 bp Feature: gene Location: 1728-2027 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DHFR_1 (pfam00186)

Seq: JVKO01000430.1 Burkholderia cenocepacia strain 35_BMUL 2437_125559_1669580_1888_,...,615+, whole genome shotgun sequence (125559 bp)
Overview 1 RT 1: 118482-123987 bp Neighborhood of RT #1 [118482, 124010] his_ut_repres FIN RVT-Retrons Histone_HNS MFS_MucK Feature: gene Location: 118482-119399 bp Feature: domain Description: his_ut_repres Location: 118722-119394 bp Feature: domain Description: his_ut_repres Location: 118722-1193 94 bp Feature: gene Location: 119718-120206 bp Feature: domain Description: FIN Location: 119814-120171 bp Feature: domain Description: FIN Location: 119814-120171 bp Feature: gene Location: 120460-121809 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 120925-121561 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 120925-121561 bp Feature: gene Location: 122114-122464 bp Feature: domain Description: Histone_HNS Location: 122156-122393 bp Feature: domain Description: Histone_HNS Location: 122156-1223 93 bp Feature: gene Location: 122775-124010 bp Feature: domain Description: MFS_MucK Location: 122853-123987 bp Feature: domain Description: MFS_MucK Location: 122853 -123 987 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816), MFS_MucK (cd17371)

Seq: JVKO01000432.1 Burkholderia cenocepacia strain 35_BMUL 2439_6188_163075_1888_,1777+,890+, whole genome shotgun sequence (6188 bp)
Overview 1 RT 1: 3323-6001 bp Neighborhood of RT #1 [3323, 6186] PRK09121 RutF RVT-GII GIIM Feature: gene Location: 3323-4351 bp Feature: domain Description: PRK09121 Location: 3335-4346 bp Feature: domain Description: PRK09121 Location: 3335-4 34 6 bp Feature: gene Location: 4453-5001 bp Feature: domain Description: RutF Location: 4519-4981 bp Feature: domain Description: RutF Location: 4 519-4 981 bp Feature: gene Location: 5338-6186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5341-5740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 534 1-574 0 bp Feature: domain Description: GIIM Note: maturase Location: 5791-6001 bp Feature: domain Description: GIIM Note: maturase Location: 5791-6001 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09121 (methionine synthase), RutF (TIGR03615), RVT-GII, GIIM (pfam08388)

Seq: JVKO01000437.1 Burkholderia cenocepacia strain 35_BMUL 2444_2662_80494_1922_,...,890_, whole genome shotgun sequence (2662 bp)
Overview 1 RT 1: 4-2415 bp Neighborhood of RT #1 [4, 2600] COG3547 RVT-GII GIIM Feature: gene Location: 4-1038 bp Feature: domain Description: COG3547 Location: 19-982 bp Feature: domain Description: COG35 47 Location: 19-982 bp Feature: gene Location: 1203-2600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1536-2154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15 36-215 4 bp Feature: domain Description: GIIM Note: maturase Location: 2205-2415 bp Feature: domain Description: GIIM Note: maturase Location: 2205 -2415 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase )