myRT

myRT report for GCA_001073275.1_ASM107327v1

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Seq: JVDK01000640.1 Burkholderia cenocepacia strain 530_BMUL 5667_2958_69788_1066+,...,2591+, whole genome shotgun sequence (2958 bp)
Overview 1 RT 1: 300-2711 bp Neighborhood of RT #1 [300, 2896] COG3547 RVT-GII GIIM Feature: gene Location: 300-1334 bp Feature: domain Description: COG3547 Location: 315-1278 bp Feature: domain Description: COG3547 Location: 31 5-1 278 bp Feature: gene Location: 1499-2896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1832-2450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 832-2450 bp Feature: domain Description: GIIM Note: maturase Location: 2501-2711 bp Feature: domain Description: GIIM Note: maturase Location: 2501 -271 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: JVDK01000706.1 Burkholderia cenocepacia strain 530_BMUL 5733_3216_36751_1542+,2591_, whole genome shotgun sequence (3216 bp)
Overview 1 RT 1: 1200-3030 bp Neighborhood of RT #1 [1200, 3215] DHFR_1 RVT-GII GIIM Feature: gene Location: 1200-1499 bp Feature: gene Location: 1790-2290 bp Feature: domain Description: DHFR_1 Location: 1802-2279 bp Feature: domain Description: DHFR_1 Location: 1802 -2 2 79 bp Feature: gene Location: 2376-3215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2379-2769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 379-2 769 bp Feature: domain Description: GIIM Note: maturase Location: 2820-3030 bp Feature: domain Description: GIIM Note: maturase Location: 2 82 0-3030 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DHFR_1 (pfam00186), RVT-GII, GIIM (pfam08388)

Seq: JVDK01000749.1 Burkholderia cenocepacia strain 530_BMUL 5778_6178_105460_1847+,...,2591_, whole genome shotgun sequence (6178 bp)
Overview 1 RT 1: 3323-5992 bp Neighborhood of RT #1 [3323, 6177] PRK09121 RutF RVT-GII GIIM Feature: gene Location: 3323-4351 bp Feature: domain Description: PRK09121 Location: 3335-4346 bp Feature: domain Description: PRK09121 Location: 3 3 3 5-43 46 bp Feature: gene Location: 4453-5001 bp Feature: domain Description: RutF Location: 4519-4981 bp Feature: domain Description: RutF Location: 4519-4981 bp Feature: gene Location: 5338-6177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5341-5731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53 41-573 1 bp Feature: domain Description: GIIM Note: maturase Location: 5782-5992 bp Feature: domain Description: GIIM Note: maturase Location: 5782-5992 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09121 (methionine synthase), RutF (TIGR03615), RVT-GII, GIIM (pfam08388)

Seq: JVDK01001044.1 Burkholderia cenocepacia strain 530_BMUL 6076_42993_405972_4221_,...,369+, whole genome shotgun sequence (43111 bp)
Overview 1 RT 1: 38811-42722 bp Neighborhood of RT #1 [38811, 42793] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 38811-39728 bp Feature: domain Description: his_ut_repres Location: 39051-39723 bp Feature: domain Description: his_ut_repres Location: 39051-39723 bp Feature: gene Location: 40047-40535 bp Feature: domain Description: FIN Location: 40143-40500 bp Feature: domain Description: FIN Location: 4 014 3-4 0500 bp Feature: gene Location: 40789-42138 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41254-41890 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4 1254 -4 1890 bp Feature: gene Location: 42443-42793 bp Feature: domain Description: Histone_HNS Location: 42485-42722 bp Feature: domain Description: Histone_HNS Location: 4 24 85-4 2722 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: JVDK01001091.1 Burkholderia cenocepacia strain 530_BMUL 6124_13090_109933_4593+,...,2284+, whole genome shotgun sequence (13151 bp)
Overview 1 RT 1: 9560-12809 bp Neighborhood of RT #1 [9560, 12967] Gmd GDP_MD_SDR_e RVT-GII GIIM Feature: gene Location: 9560-10606 bp Feature: domain Description: Gmd Location: 9575-10592 bp Feature: domain Description: Gmd Location: 95 75 -105 92 bp Feature: gene Location: 10668-11558 bp Feature: domain Description: GDP_MD_SDR_e Location: 10671-11526 bp Feature: domain Description: GDP_MD_SDR_e Location: 10671-115 26 bp Feature: gene Location: 11678-12967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11933-12548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11933-125 48 bp Feature: domain Description: GIIM Note: maturase Location: 12608-12809 bp Feature: domain Description: GIIM Note: maturase Location: 12608-12809 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDP_MD_SDR_e (cd05260), RVT-GII, GIIM (pfam08388), Gmd (COG1089)