myRT

myRT report for GCA_001076545.1_ASM107654v1

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Seq: JVCP01000129.1 Pseudomonas aeruginosa strain 549_PAER 1143_94943_1512337_581_,...,811_, whole genome shotgun sequence (94943 bp)
Overview 1 RT 1: 61432-70276 bp 2 RT 2: 86541-94942 bp Neighborhood of RT #1 [61432, 70284] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [86541, 94941] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH Feature: gene Location: 61432-62106 bp Feature: domain Description: NTP_transferase_like_1 Location: 61438-62077 bp Feature: domain Description: NTP_transferase_like_1 Location: 61 438-62077 bp Feature: gene Location: 62103-63119 bp Feature: domain Description: COG3178 Location: 62106-63105 bp Feature: domain Description: COG31 78 Location: 621 06-631 05 bp Feature: gene Location: 64392-66104 bp Feature: RT Description: RVT_N Location: 64449-64692 bp Feature: RT Description: RVT_N Location: 64449-64692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64737-65373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64737-65373 bp Feature: domain Description: YkfC Location: 65580-65733 bp Feature: domain Description: YkfC Location: 65580-65733 bp Feature: domain Description: HNH Note: nucleases Location: 65910-66048 bp Feature: domain Description: HNH Note: nucleases Location: 6591 0-66048 bp Feature: gene Location: 66237-69011 bp Feature: domain Description: LptD Location: 66432-68997 bp Feature: domain Description: LptD Location: 66432-68997 bp Feature: gene Location: 69070-70284 bp Feature: domain Description: PRK10770 Location: 69082-70276 bp Feature: domain Description: PRK1 0770 Location: 69082-70276 bp Feature: gene Location: 86541-88394 bp Feature: domain Description: PRK05658 Location: 86553-88392 bp Feature: domain Description: PRK05658 Location: 86553-88392 bp Feature: gene Location: 88501-92238 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 88609-89266 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 88609-89266 bp Feature: domain Description: PRK09776 Location: 89479-89950 bp Feature: domain Description: PRK09776 Location: 89479-89950 bp Feature: domain Description: PAS Location: 89995-90532 bp Feature: domain Description: PAS Location: 89995-90532 bp Feature: domain Description: PRK10060 Location: 90541-92188 bp Feature: domain Description: PRK1 0060 Location: 90541 -921 88 bp Feature: gene Location: 93319-94941 bp Feature: RT Description: RVT_N Location: 93376-93616 bp Feature: RT Description: RVT_N Location: 93376-9361 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93664-94300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93664-94300 bp Feature: domain Description: GIIM Note: maturase Location: 94354-94585 bp Feature: domain Description: GIIM Note: maturase Location: 94354-94585 bp Feature: domain Description: HNH Note: nucleases Location: 94837-94942 bp Feature: domain Description: HNH Note: nucleases Location: 94837-94942 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388)