myRT

myRT report for GCA_001077135.1_ASM107713v1

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Seq: JUYD01000174.1 Pseudomonas aeruginosa strain 660_PAER 2136_102678_1267710_295+,...,1840_, whole genome shotgun sequence (102724 bp)
Overview 1 RT 1: 31533-41838 bp Neighborhood of RT #1 [31533, 41840] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 31533-32654 bp Feature: domain Description: COG3177 Location: 31551-32643 bp Feature: domain Description: COG31 77 Location: 31 551 -32643 bp Feature: gene Location: 32912-33049 bp Feature: gene Location: 33377-35062 bp Feature: RT Description: RVT_N Location: 33434-33674 bp Feature: RT Description: RVT_N Location: 33434-33674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33722-34358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33722-34358 bp Feature: domain Description: GIIM Note: maturase Location: 34412-34643 bp Feature: domain Description: GIIM Note: maturase Location: 3441 2-34643 bp Feature: domain Description: HNH Note: nucleases Location: 34895-35033 bp Feature: domain Description: HNH Note: nucleases Location: 34895-35033 bp Feature: gene Location: 36143-39880 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 36251-36908 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 36251 -36908 bp Feature: domain Description: PRK09776 Location: 37121-37592 bp Feature: domain Description: PRK09776 Location: 371 21 -37592 bp Feature: domain Description: PAS Location: 37682-38174 bp Feature: domain Description: PAS Location: 37682-381 74 bp Feature: domain Description: PRK10060 Location: 38183-39830 bp Feature: domain Description: PRK1 0060 Location: 381 83-39830 bp Feature: gene Location: 39987-41840 bp Feature: domain Description: PRK05658 Location: 39999-41838 bp Feature: domain Description: PRK05658 Location: 39999-41 838 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)

Seq: JUYD01000395.1 Pseudomonas aeruginosa strain 660_PAER 2358_64875_664008_1755+,...,658+, whole genome shotgun sequence (63972 bp)
Overview 1 RT 1: 12922-23678 bp Neighborhood of RT #1 [12922, 23678] RVT-GII GIIM DUF3085 DUF3577 DUF3577 DUF3275 RVT_N RVT-GII GIIM HNHc DUF3275 Feature: gene Location: 12922-13659 bp Feature: gene Location: 13757-14035 bp Feature: gene Location: 14580-15986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14919-15534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14919-15534 bp Feature: domain Description: GIIM Note: maturase Location: 15594-15807 bp Feature: domain Description: GIIM Note: maturase Location: 15594-15807 bp Feature: gene Location: 16080-17333 bp Feature: gene Location: 17579-17842 bp Feature: domain Description: DUF3085 Location: 17609-17729 bp Feature: domain Description: DUF3085 Location: 17609-1772 9 bp Feature: gene Location: 19179-20096 bp Feature: domain Description: DUF3577 Location: 19194-19539 bp Feature: domain Description: DUF3577 Location: 19194-19539 bp Feature: domain Description: DUF3577 Location: 19572-19950 bp Feature: domain Description: DUF3577 Location: 19572 -19950 bp Feature: gene Location: 20153-20371 bp Feature: domain Description: DUF3275 Location: 20195-20351 bp Feature: domain Description: DUF32 75 Location: 2 0195-2 0351 bp Feature: gene Location: 20967-22685 bp Feature: RT Description: RVT_N Location: 21024-21267 bp Feature: RT Description: RVT_N Location: 2 102 4-2 12 67 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21312-21963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 1312 -2 1963 bp Feature: domain Description: GIIM Note: maturase Location: 22017-22248 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 017-2 2 2 48 bp Feature: domain Description: HNHc Note: nucleases Location: 22482-22638 bp Feature: domain Description: HNHc Note: nucleases Location: 2 2 482 -2 2 638 bp Feature: gene Location: 22837-23259 bp Feature: domain Description: DUF3275 Location: 22840-23236 bp Feature: domain Description: DUF32 75 Location: 2 2 840-2 32 36 bp Feature: gene Location: 23256-23678 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF3085 (pfam11284), DUF3577 (pfam12101), DUF3275 (pfam11679), RVT_N (pfam13655), HNHc (smart00507)