myRT

myRT report for GCA_001077245.1_ASM107724v1

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Seq: JUOA01000299.1 Bacteroides fragilis strain 915_BFRA 1003_1864_115812, whole genome shotgun sequence (1864 bp)
Overview 1 RT 1: 85-1360 bp Neighborhood of RT #1 [85, 1752] RVT_N RVT-GII GIIM Feature: gene Location: 85-1752 bp Feature: domain Description: RVT_N Location: 139-382 bp Feature: domain Description: RVT_N Location: 1 39-382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 427-1075 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 427-1 075 bp Feature: domain Description: GIIM Note: maturase Location: 1129-1360 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 29-1 360 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JUOA01000301.1 Bacteroides fragilis strain 915_BFRA 1009_1686_100099, whole genome shotgun sequence (1686 bp)
Overview 1 RT 1: 1-1667 bp Neighborhood of RT #1 [1, 1684] RVT-GII Intron_maturas2 COG4646 Feature: gene Location: 1-1344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-62 8 bp Feature: domain Description: Intron_maturas2 Location: 784-1012 bp Feature: domain Description: Intron_maturas2 Location: 784-1012 bp Feature: gene Location: 1331-1684 bp Feature: domain Description: COG4646 Location: 1442-1667 bp Feature: domain Description: COG4646 Location: 1442 -1667 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), COG4646 (Adenine-specific DNA methylase, N12 class )

Seq: JUOA01000498.1 Bacteroides fragilis strain 915_BFRA 1614_7306_467482, whole genome shotgun sequence (7306 bp)
Overview 1 RT 1: 750-4281 bp Neighborhood of RT #1 [750, 4397] RVT-CRISPR Cas1_I-II-III Cmr6_III-B Cas_Cmr5 Feature: gene Location: 750-3020 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 957-1563 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 957-1563 bp Feature: domain Description: Cas1_I-II-III Location: 2022-2979 bp Feature: domain Description: Cas1_I-II-III Location: 2022-2979 bp Feature: gene Location: 3040-3984 bp Feature: domain Description: Cmr6_III-B Location: 3196-3973 bp Feature: domain Description: Cmr6_III-B Location: 3 196-3 973 bp Feature: gene Location: 3987-4397 bp Feature: domain Description: Cas_Cmr5 Location: 4035-4281 bp Feature: domain Description: Cas_Cmr5 Location: 403 5-4281 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas1_I-II-III (cl00656), Cmr6_III-B (cd09661), Cas_Cmr5 (pfam09701)

Seq: JUOA01000647.1 Bacteroides fragilis strain 915_BFRA 2157_8079_519480, whole genome shotgun sequence (8079 bp)
Overview 1 RT 1: 3-6322 bp Neighborhood of RT #1 [3, 6324] RpsA RVT-Retrons GlnA3 Feature: gene Location: 3-215 bp Feature: domain Description: RpsA Location: 87-216 bp Feature: domain Description: RpsA Location: 87-216 bp Feature: gene Location: 357-1469 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 672-1221 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 672-1221 bp Feature: gene Location: 1676-3895 bp Feature: gene Location: 4135-6324 bp Feature: domain Description: GlnA3 Location: 4210-6322 bp Feature: domain Description: GlnA3 Location: 4 210-6322 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RpsA (COG0539), RVT-Retrons, GlnA3 (COG3968)

Seq: JUOA01000718.1 Bacteroides fragilis strain 915_BFRA 2377_10374_591299, whole genome shotgun sequence (10374 bp)
Overview 1 RT 1: 8494-10300 bp Neighborhood of RT #1 [8494, 10371] DUF4133 DUF4134 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 8494-8790 bp Feature: domain Description: DUF4133 Location: 8536-8713 bp Feature: domain Description: DUF4133 Location: 85 36-8713 bp Feature: gene Location: 8803-8997 bp Feature: domain Description: DUF4134 Location: 8893-8983 bp Feature: domain Description: DUF4134 Location: 8893-8983 bp Feature: gene Location: 9022-10371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9025-9646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9025 -9646 bp Feature: domain Description: Intron_maturas2 Location: 9835-10045 bp Feature: domain Description: Intron_maturas2 Location: 9835 -10045 bp Feature: domain Description: HNHc Note: nucleases Location: 10195-10300 bp Feature: domain Description: HNHc Note: nucleases Location: 10195 -10300 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JUOA01000788.1 Bacteroides fragilis strain 915_BFRA 2651_544_35632, whole genome shotgun sequence (544 bp)
Overview 1 RT 1: 69-543 bp Neighborhood of RT #1 [69, 542] RVT-GII Feature: gene Location: 69-542 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 333-543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 333-543 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JUOA01000915.1 Bacteroides fragilis strain 915_BFRA 3048_546_31858, whole genome shotgun sequence (546 bp)
Overview 1 RT 1: 71-545 bp Neighborhood of RT #1 [71, 544] RVT-GII Feature: gene Location: 71-544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 335-545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 335-545 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JUOA01001032.1 Bacteroides fragilis strain 915_BFRA 3392_1813_118346, whole genome shotgun sequence (1813 bp)
Overview 1 RT 1: 83-1430 bp Neighborhood of RT #1 [83, 1810] RVT_N RVT-GII GIIM Feature: gene Location: 83-1810 bp Feature: domain Description: RVT_N Location: 209-452 bp Feature: domain Description: RVT_N Location: 209-452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 497-1145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 497-1145 bp Feature: domain Description: GIIM Note: maturase Location: 1196-1430 bp Feature: domain Description: GIIM Note: maturase Location: 1196-1430 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)