myRT

myRT report for GCA_001077495.1_ASM107749v1

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Seq: LFYQ01000001.1 Pseudomonas putida strain H contig_1, whole genome shotgun sequence (535962 bp)
Overview 1 RT 1: 17203-21233 bp Neighborhood of RT #1 [17203, 21233] Ntox46 Tsi6 RVT-GII Feature: gene Location: 17203-18279 bp Feature: domain Description: Ntox46 Location: 17785-18253 bp Feature: domain Description: Ntox46 Location: 1 7785-1 8253 bp Feature: gene Location: 18276-18572 bp Feature: domain Description: Tsi6 Location: 18291-18537 bp Feature: domain Description: Tsi6 Location: 1 8291 -1 8537 bp Feature: gene Location: 19123-19422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19126-19258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 91 26-1 9258 bp Feature: gene Location: 19832-20143 bp Feature: gene Location: 20535-21233 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ntox46 (pfam15538), Tsi6 (pfam18660), RVT-GII

Seq: LFYQ01000010.1 Pseudomonas putida strain H contig_18, whole genome shotgun sequence (180390 bp)
Overview 1 RT 1: 175910-180381 bp Neighborhood of RT #1 [175910, 180389] HTH_3 HTH_3 RVT-GII InsE Feature: gene Location: 175910-177160 bp Feature: gene Location: 177822-178220 bp Feature: domain Description: HTH_3 Location: 177861-177948 bp Feature: domain Description: HTH_3 Location: 177861-177948 bp Feature: domain Description: HTH_3 Location: 178140-178212 bp Feature: domain Description: HTH_3 Location: 178140-1782 12 bp Feature: gene Location: 178341-179462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 178380-179070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 178380-179070 bp Feature: gene Location: 180135-180389 bp Feature: domain Description: InsE Location: 180150-180381 bp Feature: domain Description: InsE Location: 180150-180381 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_3 (pfam01381), RVT-GII, InsE (COG2963)

Seq: LFYQ01000016.1 Pseudomonas putida strain H contig_23, whole genome shotgun sequence (237248 bp)
Overview 1 RT 1: 218804-225450 bp Neighborhood of RT #1 [218804, 225450] KOG2848 PRK06213 RVT-GII GIIM TonB-siderophor Feature: gene Location: 218804-219517 bp Feature: domain Description: KOG2848 Location: 218822-219509 bp Feature: domain Description: KOG2848 Location: 218822-219509 bp Feature: gene Location: 219638-220327 bp Feature: domain Description: PRK06213 Location: 219641-220322 bp Feature: domain Description: PRK06213 Location: 219641-2203 22 bp Feature: gene Location: 221089-222510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 221446-222061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 221446-222061 bp Feature: domain Description: GIIM Note: maturase Location: 222115-222343 bp Feature: domain Description: GIIM Note: maturase Location: 222115-2223 43 bp Feature: gene Location: 222737-224869 bp Feature: domain Description: TonB-siderophor Location: 222926-224867 bp Feature: domain Description: TonB-siderophor Location: 222926-224867 bp Feature: gene Location: 225070-225450 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG2848 (KOG2848, 1-acyl-sn-glycerol-3-phosphate acyltransferase ), PRK06213 (crotonase/enoyl-CoA hydratase family protein), RVT-GII, GIIM (pfam08388), TonB-siderophor (TIGR01783)