myRT

myRT report for GCA_001077695.1_ASM107769v1

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Seq: JXRW01000007.1 Alteromonas macleodii strain MIT1002 contig00007, whole genome shotgun sequence (122640 bp)
Overview 1 RT 1: 78861-88920 bp Neighborhood of RT #1 [78861, 88946] SIR2_2 YjgR RVT-UG5 COG0610 DUF45 Feature: gene Location: 78861-79946 bp Feature: domain Description: SIR2_2 Location: 79275-79770 bp Feature: domain Description: SIR2_2 Location: 79275-79770 bp Feature: gene Location: 79948-81687 bp Feature: domain Description: YjgR Location: 80398-81619 bp Feature: domain Description: YjgR Location: 80398-81 61 9 bp Feature: gene Location: 81915-84857 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 82404-82860 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 82404-82860 bp Feature: gene Location: 84901-88182 bp Feature: domain Description: COG0610 Location: 84928-88021 bp Feature: domain Description: COG061 0 Location: 84928-88021 bp Feature: gene Location: 88197-88946 bp Feature: domain Description: DUF45 Location: 88305-88920 bp Feature: domain Description: DUF45 Location: 88305-88920 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SIR2_2 (pfam13289), YjgR (COG0433), RVT-UG5, COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), DUF45 (pfam01863)

Seq: JXRW01000031.1 Alteromonas macleodii strain MIT1002 contig00031, whole genome shotgun sequence (54804 bp)
Overview 1 RT 1: 45311-49216 bp Neighborhood of RT #1 [45311, 49257] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 Feature: gene Location: 45311-45835 bp Feature: domain Description: DDE_Tnp_IS66 Location: 45338-45689 bp Feature: domain Description: DDE_Tnp_IS66 Location: 45338-45689 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 45710-45818 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 45710-45818 bp Feature: gene Location: 46133-46339 bp Feature: gene Location: 46378-47772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46738-47422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46738-4742 2 bp Feature: gene Location: 47777-48820 bp Feature: domain Description: LZ_Tnp_IS66 Location: 47858-48050 bp Feature: domain Description: LZ_Tnp_IS66 Location: 47858-48050 bp Feature: domain Description: zf-IS66 Location: 48074-48206 bp Feature: domain Description: zf-IS66 Location: 48074-482 06 bp Feature: domain Description: DDE_Tnp_IS66 Location: 48266-48707 bp Feature: domain Description: DDE_Tnp_IS66 Location: 482 66-48707 bp Feature: gene Location: 48907-49257 bp Feature: domain Description: TnpB_IS66 Location: 48934-49216 bp Feature: domain Description: TnpB_IS66 Location: 48934-492 16 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), TnpB_IS66 (pfam05717)

Seq: JXRW01000098.1 Alteromonas macleodii strain MIT1002 contig00098, whole genome shotgun sequence (1692 bp)
Overview 1 RT 1: 1-1464 bp Neighborhood of RT #1 [1, 1631] RVT-GII GIIM Feature: gene Location: 1-294 bp Feature: gene Location: 282-1631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 561-1194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 561-1194 bp Feature: domain Description: GIIM Note: maturase Location: 1236-1464 bp Feature: domain Description: GIIM Note: maturase Location: 123 6-1464 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)